RetrogeneDB ID:

retro_fcat_150

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A1:33943907..33944273(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000008469
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_150
AGGCCTGCTGGGAACAGGACTTCTAAAGTGAAAAAGATTTCTGGAAGTCTGTGATCCAAAGTCACTTTTGCTGGCTATGA
GCTAGGTCTCTGGAACCAGAGGGAACACACAGCTCTTCTTCAAGTTGAAGGTGTTTAGGCTCAAGATGAAACTGAATTCT
ATCTAGGCAAGAGATGTGCTATGTGTACAAAGCAAAGAACAACACAGTGACTCCTGGTGGCAAACTGAATAAAACCAGAG
TAATCTGGGGAAAAGTTAACTGGTGCTCATGGAAGCAGTGGCATGGTTTGTGCCAAATTCCGAAGCAACCTTCCTGCTAT
CGCCATTTACCACAGAATCCGTGTGATTCTGTACCCCTTAAAGATT

ORF - retro_fcat_150 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.42 %
Parental protein coverage: 99.19 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalRPAGNRTPETTNMSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCA-YVYKAKNNT
RPAGNRT......SG.L.SK..FAGY..GL.NQREHTALL..EGV.A.DETEFYLGKRCA.YVYKAKNNT
RetrocopyRPAGNRTSKVKKISGSL*SKVTFAGYELGLWNQREHTALLQVEGV*AQDETEFYLGKRCA<YVYKAKNNT
ParentalVTPGGKPNKTRVIWGKV-TRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI
VTPGGK.NKTRVIWGKV.T.AHG.SGMV.AKFRSNLPA.AI.HRIRV.LYP..I
RetrocopyVTPGGKLNKTRVIWGKV>TGAHGSSGMVCAKFRSNLPAIAIYHRIRVILYPLKI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 33 .05 RPM
SRP017611_kidney 0 .00 RPM 153 .25 RPM
SRP017611_liver 0 .00 RPM 88 .15 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_150 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_150 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Felis catus ENSFCAG00000008469 36 retrocopies



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