RetrogeneDB ID: | retro_fcat_1546 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:42961769..42962092(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTS | ||
Ensembl ID: | ENSFCAG00000024702 | ||
Aliases: | None | ||
Description: | 6-pyruvoyltetrahydropterin synthase [Source:HGNC Symbol;Acc:9689] |
Percent Identity: | 75.23 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GKCNNPNG-HGHNYKVVVTVHGEIDPVTGMVMNMTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTEN |
GKC.NPN..HGH.YKVVVTVH.E.DPVTG.VMN.T.LK.YMEE..MKPLDH.NLDLDVPYFADVV..TEN | |
Retrocopy | GKCHNPNA<HGHKYKVVVTVHRETDPVTGVVMNLTNLKGYMEETVMKPLDHNNLDLDVPYFADVVNLTEN |
Parental | VAVYIWENLQKFLP---MGVLYKVKVYETDNNVVVYKGE |
.AV.IWENLQK.LP......LY.VKVYETDNN.VVYK.E | |
Retrocopy | IAVDIWENLQKSLPXXXXXXLY*VKVYETDNNTVVYKEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .24 RPM |
SRP017611_liver | 0 .00 RPM | 4 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003968 | 3 retrocopies | |
Bos taurus | ENSBTAG00000003770 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000013915 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014823 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008145 | 2 retrocopies | |
Felis catus | ENSFCAG00000024702 | 3 retrocopies |
retro_fcat_1546 , retro_fcat_212, retro_fcat_564,
|
Myotis lucifugus | ENSMLUG00000023388 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015255 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001975 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000015040 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010526 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000061 | 1 retrocopy |