>retro_fcat_1701
AAAGGACGCCAACTGAATGACTTCTCTGCAGCCTTAAAGGATTTCCAGGCTGGGTGGAGAGGAGGGTCTGCAAAGGAAAA
GGAGAAGATCGCCAGGGCGAGAGCCGCATGTCTCCCTGCAGAGGGGAGGCCACGAAAGAGCAGCGCCTGTCCTTTGATGG
CCACGACGAGTGGGACCAGATGCAGAACCAGGGGGATGACGTGGCCACCTCGGAGCAGGAACTGGAACTGATTAAAGAGA
GGGAAAGGGCAATTCGGCAGCTGCAGGCTCACACTTTGGACGTCCGTCAGAGGTTTAAAGATTTGCCCGTGATGATCCGT
GACCAAGGAGACCCCACTGACAGCACGGAAGCCGACGGAGAAGGCCCAGAGGTGCGTGCAGACAGAGCCACGCCGGTCAG
TTTCCGCAAGCAGCTTACGATCAGAAAAGAAAATCTCGCAAGAACGTCTGTGTTCTGGTGCTCGTCCTGTTGGTTATCAC
TGTTCCCTTGGTACTTAGTATCTGACAGATTTAT
ORF - retro_fcat_1701 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.71 % |
Parental protein coverage: |
62.41 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | KERLMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSAEERQRE-EQLVSFDGHEEWNQMQSQEDEV |
| K.R..NDFSAAL..FQA..R..S.KEKE.IARARA...L.AE.R.R..EQ..SFDGH.EW.QMQ.Q.D.V |
Retrocopy | KGRQLNDFSAALKDFQAGWRGGSAKEKEKIARARAAC-LPAEGRPRK<EQRLSFDGHDEWDQMQNQGDDV |
|
Parental | AITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQR-A |
| A..EQ.LELIKERE.AIRQL.A..LDV.Q.FKDL..MI.DQGD..DS.EA..E..EV...RAT....R.. |
Retrocopy | ATSEQELELIKERERAIRQLQAHTLDVRQRFKDLPVMIRDQGDPTDSTEADGEGPEVRADRATPVSFR<Q |
|
Parental | AYYQKK--SRKKICILVLVLSVIIVILVLIIWQIY |
| A.Y..K..SRK..C.LVLVL.VI.V.LVL.I.QIY |
Retrocopy | AAYDQKRKSRKNVCVLVLVLLVITVPLVLSI*QIY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .11 RPM |
144 .50 RPM |
SRP017611_kidney |
0 .00 RPM |
47 .72 RPM |
SRP017611_liver |
0 .30 RPM |
12 .03 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1701 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1701 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.