RetrogeneDB ID: | retro_fcat_977 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:85099110..85099583(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STX7 | ||
Ensembl ID: | ENSFCAG00000002292 | ||
Aliases: | None | ||
Description: | syntaxin 7 [Source:HGNC Symbol;Acc:11442] |
Percent Identity: | 88.68 % |
Parental protein coverage: | 60.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAQFTTSLTNFQKVQREAAEKE |
PE....LQQKQQYT.QLAKET.KYIKEFGSLPTTPSEQ.QRK.QKD.L.AQFTTSLTNFQKVQREAAEKE | |
Retrocopy | PEDHTMLQQKQQYTTQLAKETGKYIKEFGSLPTTPSEQHQRKMQKDPLMAQFTTSLTNFQKVQREAAEKE |
Parental | KEFVARVRASSRVSGGFPEDTSKERNLVSWES-QAQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMD |
KEFVA.VRASSRVSGGFPED.SK.RNLVSWES.QAQPQVQVQ.E.IT.DDL.LIHERESSIRQLEADIMD | |
Retrocopy | KEFVAQVRASSRVSGGFPEDSSKDRNLVSWES<QAQPQVQVQNENITDDDLCLIHERESSIRQLEADIMD |
Parental | INEIFKDLGMMIHEQGDVI |
INEIFKDLGMMIHEQGDVI | |
Retrocopy | INEIFKDLGMMIHEQGDVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 40 .86 RPM |
SRP017611_kidney | 0 .10 RPM | 32 .98 RPM |
SRP017611_liver | 0 .10 RPM | 16 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010117 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000295 | 1 retrocopy | |
Felis catus | ENSFCAG00000002292 | 1 retrocopy |
retro_fcat_977 ,
|
Felis catus | ENSFCAG00000029657 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004301 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014440 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009853 | 1 retrocopy |