RetrogeneDB ID: | retro_fcat_1730 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:23890200..23890886(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRKAG1 | ||
Ensembl ID: | ENSFCAG00000000091 | ||
Aliases: | None | ||
Description: | protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:HGNC Symbol;Acc:9385] |
Percent Identity: | 68.97 % |
Parental protein coverage: | 69.82 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | SALVQIYELEEHKIETWREVYLQDSFKPL-VCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTH |
..LV.IYEL.EHKIETWREV...DS..PL.V.I..NASLFD.VSSLI.NKI.RLPVID.ESGNTLYI.T. | |
Retrocopy | TVLV*IYELKEHKIETWREV*VRDSSNPL<VRIASNASLFDDVSSLIQNKIRRLPVIDSESGNTLYIFTY |
Parental | KRILKFLKLFITEFPKPEFMSKSLE-ELQIGTYANIAMVRTTTPVYVALGI-FVQHRVSALPVVDEKGRV |
K..LK.LKLF..EFPKPEF.S.SLE.ELQ..T.AN.AM..TTTPVY..LGI.FVQ...SALP.VDEK..V | |
Retrocopy | KHVLKCLKLFADEFPKPEFVSNSLE>ELQVST*ANAAMAHTTTPVYMPLGI<FVQCGFSALPLVDEKECV |
Parental | VDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEND |
V..Y.KF.VI..AAE.T..NLDVSVTKALQ..S.YF..V.KCYLHET.ETIINRLV.AE.H..VVVD.ND | |
Retrocopy | VNFYPKFYVISVAAEQT*SNLDVSVTKALQC*SRYFRCVSKCYLHETPETIINRLVDAEIHLFVVVDGND |
Parental | VVKGIVSLSDILQALVLTGGEK |
.VK..VSLSDI.Q..VLTG... | |
Retrocopy | AVKETVSLSDIPQVSVLTGRDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 33 .70 RPM |
SRP017611_liver | 0 .00 RPM | 20 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006964 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006397 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020827 | 2 retrocopies | |
Felis catus | ENSFCAG00000000091 | 1 retrocopy |
retro_fcat_1730 ,
|
Felis catus | ENSFCAG00000003842 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011156 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008409 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000185 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004730 | 1 retrocopy |