RetrogeneDB ID: | retro_mluc_2417 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430353:365425..365934(+) | ||
Located in intron of: | ENSMLUG00000002654 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRKAG1 | ||
Ensembl ID: | ENSMLUG00000011156 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.4 % |
Parental protein coverage: | 51.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTP-VYVALGIFVQHRVSAL |
SGNTLYILTHKRI.KFLKL.I.EFPKPEFMS.SLEELQ.GTYANIAM..TTTP.VY..LGIFVQHRV.AL | |
Retrocopy | SGNTLYILTHKRIFKFLKLLIAEFPKPEFMSESLEELQPGTYANIAMACTTTP<VYMVLGIFVQHRVPAL |
Parental | PVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVH |
PVVDEKGRVVDI.SKFDVINLAAEKT........TKALQHRS.Y.EGVL.C.LHET.ETIINR.V.A.VH | |
Retrocopy | PVVDEKGRVVDIDSKFDVINLAAEKT-STT*MCLTKALQHRSRYSEGVLQCPLHETQETIINRPVGAGVH |
Parental | RLVVVDENDVVKGIVSLSDILQALVLTGGEKP |
RLVVV.EN.VVKGIV.LSDILQALVLTGG.KP | |
Retrocopy | RLVVVVENGVVKGIVALSDILQALVLTGGDKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006964 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006397 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020827 | 2 retrocopies | |
Felis catus | ENSFCAG00000000091 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011156 | 2 retrocopies |
retro_mluc_2417 , retro_mluc_451,
|
Oryctolagus cuniculus | ENSOCUG00000008409 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000185 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004730 | 1 retrocopy |