RetrogeneDB ID: | retro_fcat_1784 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:36634548..36634826(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027354 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN6 | ||
Ensembl ID: | ENSFCAG00000028199 | ||
Aliases: | None | ||
Description: | prefoldin subunit 6 [Source:HGNC Symbol;Acc:4926] |
Percent Identity: | 68.37 % |
Parental protein coverage: | 75.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLL-GPVLVKQELGE |
ELIQKKLQG.VEK...LQ.DLSKSM.GRQKLEAQLTEN.IV....ALLDG.NVVF.LL.G..LV.QE.GE | |
Retrocopy | ELIQKKLQGDVEKELELQQDLSKSMLGRQKLEAQLTENDIV----ALLDGPNVVFTLL<GFLLVRQERGE |
Parental | ARATVGKRLDYITAEIKRYESQLRDLER |
A.AT.GKRLDYITA.I.R.........R | |
Retrocopy | APATGGKRLDYITADIERCDRRRQSSNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .71 RPM |
SRP017611_liver | 0 .00 RPM | 6 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001576 | 2 retrocopies | |
Bos taurus | ENSBTAG00000010723 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000956 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000013828 | 1 retrocopy | |
Felis catus | ENSFCAG00000028199 | 1 retrocopy |
retro_fcat_1784 ,
|
Macropus eugenii | ENSMEUG00000016778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000922 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002364 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010559 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028341 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000983 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001910 | 1 retrocopy |