RetrogeneDB ID: | retro_btau_619 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:37710406..37710792(+) | ||
Located in intron of: | ENSBTAG00000002689 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN6 | ||
Ensembl ID: | ENSBTAG00000010723 | ||
Aliases: | None | ||
Description: | Prefoldin subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q17Q89] |
Percent Identity: | 91.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELG |
MAELIQKKLQGEVEKYQQLQKDLSKS.SGRQKLE.QLTENNI.KEELALLDGSNVVFKLLGP.LVKQELG | |
Retrocopy | MAELIQKKLQGEVEKYQQLQKDLSKSVSGRQKLEVQLTENNIMKEELALLDGSNVVFKLLGPILVKQELG |
Parental | EARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKAG-APGKA |
E.RATVGKRLDYITAEIK.YESQLRDLE.QSEQQRET.AQLQQEFQ.AQAA.AG.APGKA | |
Retrocopy | ESRATVGKRLDYITAEIK*YESQLRDLERQSEQQRETFAQLQQEFQTAQAAEAG<APGKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 15 .86 RPM |
ERP005899_muscle | 0 .00 RPM | 20 .53 RPM |
SRP017611_brain | 0 .00 RPM | 29 .19 RPM |
SRP017611_kidney | 0 .06 RPM | 23 .00 RPM |
SRP017611_liver | 0 .00 RPM | 17 .74 RPM |
SRP030211_testis | 0 .05 RPM | 80 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001576 | 2 retrocopies | |
Bos taurus | ENSBTAG00000010723 | 1 retrocopy |
retro_btau_619 ,
|
Canis familiaris | ENSCAFG00000000956 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000019520 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013828 | 1 retrocopy | |
Felis catus | ENSFCAG00000028199 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000922 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002364 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024309 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010559 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028341 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000983 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001910 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000473 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006330 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013280 | 1 retrocopy |