RetrogeneDB ID: | retro_fcat_1817 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:45673510..45674055(+) | ||
Located in intron of: | ENSFCAG00000001870 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL39 | ||
Ensembl ID: | ENSFCAG00000022879 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L39 [Source:HGNC Symbol;Acc:14027] |
Percent Identity: | 78.69 % |
Parental protein coverage: | 54.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AFKDEYVVSLVRAPEVPVISGAFCYDVVLDKRLDEWMPTKENLRSFTKDARALIYKDLPFETLEVEAKVA |
AFKDE.VVSLVRAPEV.VISGAFCYD.VLDKR.D.WMPTKENL.SFT.DAR.LIYK.LPFETLEVE.K.. | |
Retrocopy | AFKDECVVSLVRAPEVSVISGAFCYDAVLDKRRDKWMPTKENLCSFTEDARVLIYKHLPFETLEVETKMT |
Parental | LEIFQHNKYKTDFIEEKASQNPERIVKLHR-FGDFIDVSEGPLIPRTSICFQYEVSAVHNLQATQLSLVR |
LEIFQH.KYK.DFIEE...QNPERIVKLHR..G.FIDVSE.P..PRTSICF..EVSAVHNLQ.TQLSLV. | |
Retrocopy | LEIFQHSKYKMDFIEEQSFQNPERIVKLHR<IGHFIDVSEDPFSPRTSICFH*EVSAVHNLQTTQLSLV* |
Parental | RFQGLSLPVHLRAHFTLWNKLLERSRKMVTEDQTKPTEESAST |
R.QGLSLP.HLRAH.T.W.K.LERS.KM.TE.QTKPTEE...T | |
Retrocopy | RIQGLSLPIHLRAHVTIWDKSLERSWKMLTEAQTKPTEENVPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .99 RPM |
SRP017611_kidney | 0 .10 RPM | 26 .49 RPM |
SRP017611_liver | 0 .00 RPM | 20 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000022879 | 2 retrocopies |
retro_fcat_1817 , retro_fcat_300,
|
Macropus eugenii | ENSMEUG00000002198 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015959 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006067 | 2 retrocopies |