RetrogeneDB ID: | retro_fcat_1913 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:44797903..44799397(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000001558 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GSPT1 | ||
Ensembl ID: | ENSFCAG00000022281 | ||
Aliases: | None | ||
Description: | G1 to S phase transition 1 [Source:HGNC Symbol;Acc:4621] |
Percent Identity: | 94.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MELSEPVVENGETEMSPEESWEHKEEISDAEPGGGSLGDGRPPEESAQEMMEEEEEIPKPKSVVAPPGAP |
MELSEPVVENGE.EM..EESWEH..E.S.AEPGG.SLGD..PPEES.QEMME.EE...K.KSVV.P.GAP | |
Retrocopy | MELSEPVVENGEVEMVLEESWEHNKEVSEAEPGGSSLGDSGPPEESGQEMMEKEE-VRKSKSVVMPSGAP |
Parental | KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTV |
KKEHVNVVFIGHVDAGKSTIGGQIM.LTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTV | |
Retrocopy | KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTV |
Parental | EVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA |
EVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA | |
Retrocopy | EVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA |
Parental | GVKHLIVLINKMDDPTVNWSSERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYT |
GVKHL.VLINKMDDPTVNWSSERYEECKEKLVPFLKKVGF.PKKDIHFMPCSGLTGAN.KEQSDFCPWYT | |
Retrocopy | GVKHLVVLINKMDDPTVNWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYT |
Parental | GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD |
GLPFIPYLDN.PNFNRS.DGPIRLPIVDKYKDMGTVVLGKLESGSI.KGQQLVMMPNKHNVEVLGILSDD | |
Retrocopy | GLPFIPYLDNMPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDD |
Parental | VETDSVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCI |
.ETD.VAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFD.QIVIIEHKSIICPGYNAVLHIHTCI | |
Retrocopy | AETDYVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCI |
Parental | EEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGK |
EEVEITALI.LVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGK | |
Retrocopy | EEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGK |
Parental | VLKLVPEKD |
VLKLVPEKD | |
Retrocopy | VLKLVPEKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 11 .59 RPM | 101 .00 RPM |
SRP017611_kidney | 15 .05 RPM | 120 .37 RPM |
SRP017611_liver | 9 .10 RPM | 77 .64 RPM |