Parental gene:

GSPT1, ENSCJAG00000018191

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:19:45926928..45946762(+)


>ENSCJAG00000018191
GCACCTGTGGAATCCTCTCAAGAGGAGCAGTCATTGTGTGAAGGTTCAAATTCAGCAGTTAGCATGGAACTTTCAGAACC
CGTTGTAGAAAATGGAGAGACAGAAATGTCCCCAGAAGAATCATGGGAGCACAAAGAAGAAATAAGTGAAGCAGAGCCGG
GGAGTGGTTCCTTGGGAGATGGAAGGCCGCCAGAGGAAAGTACCCATGAAATGATGGAGGAGGAAGAGGAAATCCCAAAA
CCGAAATCTGTGGTTGCACCGCCTGGTGCTCCTAAGAAAGAGCATGTAAATGTAGTATTCATTGGGCATGTAGATGCTGG
CAAGTCAACTATTGGAGGACAAATAATGTATTTGACTGGAATGGTTGACAAAAGGACACTTGAAAAGTATGAAAGAGAAG
CTAAAGAGAAAAACAGAGAAACTTGGTACTTGTCTTGGGCCTTAGACACAAATCAGGAAGAACGAGACAAGGGTAAAACA
GTAGAAGTGGGTCGTGCCTATTTTGAAACCGAAAAGAAGCATTTCACAATTCTAGATGCCCCTGGCCACAAGAGTTTTGT
CCCAAATATGATTGGTGGTGCCTCTCAAGCTGATTTGGCTGTGCTGGTAATCTCAGCCAGGAAGGGAGAGTTTGAAACTG
GATTTGAAAAAGGAGGACAGACAAGAGAACATGCAATGTTGGCAAAGACAGCAGGTGTAAAACACTTAATTGTGCTAATT
AATAAGATGGATGATCCAACGGTAAATTGGAGCAATGAGAGATATGAAGAATGTAAAGAGAAACTAGTGCCATTTTTGAA
AAAAGTTGGCTTCAATCCCAAAAAGGACATTCACTTCATGCCCTGCTCAGGACTTACCGGAGCAAATCTCAAAGAGCAGT
CAGATTTCTGTCCTTGGTACATTGGATTACCGTTTATTCCGTATCTGGATAATTTGCCAAACTTCAGTAGATCAGTTGAT
GGACCAATCAGGCTGCCAATTGTGGATAAGTACAAGGATATGGGCACTGTGGTCCTGGGAAAGCTGGAATCAGGATCTAT
TTGTAAAGGTCAGCAGCTTGTGATGATGCCAAACAAGCACAATGTGGAAGTTCTTGGAATACTTTCTGATGATGTAGAAA
CTGATACTGTAGCCCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAAGAGGAGATTCTTCCAGGATTTATA
CTTTGTGATCCTAATAATCTTTGTCATTCTGGACGCACATTCGATGCCCAGATAGTAATTATAGAGCACAAATCCATCAT
CTGCCCAGGCTATAATGCGGTGCTGCATATTCATACCTGTATTGAGGAAGTCGAAATAACAGCCTTAATCTGCTTGGTAG
ACAAAAAATCAGGAGAAAAAAGTAAGACCCGACCCCGTTTTGTGAAACAAGATCAAGTATGCATTGCTCGCTTGAGGACA
GCAGGAACCATCTGCCTTGAGACCTTTAAAGACTTCCCTCAGATGGGTCGTTTTACCTTAAGAGATGAGGGTAAGACAAT
TGCAATTGGAAAAGTTCTGAAACTGGTTCCAGAGAAAGACTAA

Library Parental gene expression (RPM)
SRP051959_colon 26 .91 RPM
SRP051959_heart 26 .50 RPM
SRP051959_kidney 28 .80 RPM
SRP051959_liver 34 .33 RPM
SRP051959_lung 28 .58 RPM
SRP051959_lymph_node 27 .56 RPM
SRP051959_skeletal_muscle 34 .70 RPM
SRP051959_spleen 24 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009589 ortholog_one2one 1 retrogene
retro_amel_4,
Bos taurus ENSBTAG00000003577 ortholog_one2one 2 retrogenes
retro_btau_1793, retro_btau_1840,
Canis familiaris ENSCAFG00000018856 ortholog_one2one 1 retrogene
retro_cfam_2072,
Cavia porcellus ENSCPOG00000009381 ortholog_one2one 1 retrogene
retro_cpor_73,
Equus caballus ENSECAG00000021195 ortholog_one2one 1 retrogene
retro_ecab_739,
Echinops telfairi ENSETEG00000018249 ortholog_one2one 1 retrogene
retro_etel_1626,
Felis catus ENSFCAG00000022281 ortholog_one2one 1 retrogene
retro_fcat_1913,
Gorilla gorilla ENSGGOG00000004071 ortholog_one2one 1 retrogene
retro_ggor_2906,
Microcebus murinus ENSMICG00000014137 ortholog_one2one 1 retrogene
retro_mmur_28,
Myotis lucifugus ENSMLUG00000000792 ortholog_one2one 1 retrogene
retro_mluc_98,
Macaca mulatta ENSMMUG00000023178 ortholog_one2one 1 retrogene
retro_mmul_118,
Monodelphis domestica ENSMODG00000004728 ortholog_many2many 1 retrogene
retro_mdom_1420,
Mustela putorius furo ENSMPUG00000014504 ortholog_one2one 1 retrogene
retro_mputfur_147,
Mus musculus ENSMUSG00000062203 ortholog_one2one 1 retrogene
retro_mmus_238,
Nomascus leucogenys ENSNLEG00000010199 ortholog_one2one 1 retrogene
retro_nleu_2705,
Oryctolagus cuniculus ENSOCUG00000004759 ortholog_one2one 1 retrogene
retro_ocun_1664,
Otolemur garnettii ENSOGAG00000007083 ortholog_one2one 1 retrogene
retro_ogar_100,
Pteropus vampyrus ENSPVAG00000005009 ortholog_one2one 1 retrogene
retro_pvam_1426,
Rattus norvegicus ENSRNOG00000002335 ortholog_one2many 1 retrogene
retro_rnor_2931,
Sarcophilus harrisii ENSSHAG00000005908 ortholog_many2many 1 retrogene
retro_shar_14,
Ictidomys tridecemlineatus ENSSTOG00000015406 ortholog_one2one 1 retrogene
retro_itri_109,
Tupaia belangeri ENSTBEG00000008873 ortholog_one2one 2 retrogenes
retro_tbel_3810, retro_tbel_4659,
Tarsius syrichta ENSTSYG00000013812 ortholog_one2one 2 retrogenes
retro_tsyr_1169, retro_tsyr_148,
Tursiops truncatus ENSTTRG00000011630 ortholog_one2one 1 retrogene
retro_ttru_12,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_618 97.50 100.00
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Download FASTA sequences of all ENSCJAG00000018191 retrocopies