RetrogeneDB ID: | retro_fcat_1942 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:104907252..104907773(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004274 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.71 % |
Parental protein coverage: | 64.93 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | PNEAQDSDPRSPTLGIARTPMKTSSGEPPSPLAKQLNEVFEKEASKLNRPPELVLPLEATSPSELNLPLG |
P..AQDSDP.S.TLG...TPMKTS.GE..SPL.KQL.EVFE..A.K.N.PPE.VLPLE.TS.SEL.LPLG | |
Retrocopy | PIQAQDSDPHSSTLGFSWTPMKTSGGELSSPLVKQLSEVFENKAPKSNLPPESVLPLESTSSSELDLPLG |
Parental | TQFSLEDRMPLWSQTELPSKQVSSKEEAGQPSQPPTASQGSDKP-LRDPETPRSSGSKHNRRKGNGKVLG |
T.FSLED.MP.WSQ..LP.KQV.SKEEA.QPS..P...Q.S..P.LR.PET..SSGSKH.R.K.NGK.LG | |
Retrocopy | T*FSLEDQMPPWSQIGLPYKQVFSKEEA*QPSETPMVGQVSTNP<LRVPETC*SSGSKHDRWKANGKILG |
Parental | RSPLTILQDDNSPGTLTPRQGKRPPPLSENARALK |
RS.LTIL.D.NS.GTLT..QGK..PPL......L. | |
Retrocopy | RSTLTILED*NSAGTLTLQQGKWLPPLPPQMKILR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .82 RPM |
SRP017611_liver | 0 .00 RPM | 1 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013985 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014650 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000012334 | 1 retrocopy | |
Felis catus | ENSFCAG00000004274 | 2 retrocopies |
retro_fcat_1182, retro_fcat_1942 ,
|
Mustela putorius furo | ENSMPUG00000016781 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012300 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015529 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023573 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001905 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009784 | 1 retrocopy |