RetrogeneDB ID: | retro_fcat_223 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:36400273..36401192(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026530 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.72 % |
Parental protein coverage: | 68.44 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SKSLGGPRATPRRRSQSEPRAPPPQEQCGAA-VAFMAHSPVAVQVPGMQNNIADPEELFTKLERIGKGSF |
SKSLGGP...PR.RSQSEPRAPPPQEQC..A.VAF.A.S...VQVPGMQNN.A.PEEL.TKL..IGK.SF | |
Retrocopy | SKSLGGPLSDPRSRSQSEPRAPPPQEQCATA<VAFVACSQGTVQVPGMQNNTAHPEELVTKLKHIGKVSF |
Parental | GEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGG |
GEVFKGI...TQQV.AIK....E.A..E...IQQEI.VLSQ.DSSYVTK.YG.YL..SKL...MEY.GGG | |
Retrocopy | GEVFKGI*YCTQQVLAIKVPGPEGAKEETAGIQQEIAVLSQRDSSYVTKCYGAYLERSKL--TMEYPGGG |
Parental | -SALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIK-AANVLLSEQGDVKLADFGVAGQLTDTQ |
.S.L.L..AGPFDE.QIAT.LKE.LKGL..L.SEKKIH.D.K.AA..LLSEQGDVK.ADFGV..QLTDTQ | |
Retrocopy | GSSLALPQAGPFDECQIATLLKEMLKGLHCLRSEKKIH*DRK>AASILLSEQGDVKPADFGVTVQLTDTQ |
Parental | IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVL-FLIPKNNPPTLVGD |
IKRNTFVG.PF.M.PE..Q..A..SKADIWSLGITAIE..K.EPPN.D.HPMRVL.FL..K.NPPTLVGD | |
Retrocopy | IKRNTFVGIPFRMVPELLQRWACNSKADIWSLGITAIEPSKAEPPNCDVHPMRVL>FLFQK-NPPTLVGD |
Parental | FTKSFKEFIDACLNKDPSFRPTAKELLKHKFI |
FTKSFKEFIDACLNK.P.F.PTAKELLKHKFI | |
Retrocopy | FTKSFKEFIDACLNKEP*FCPTAKELLKHKFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 3 .19 RPM |
SRP017611_liver | 0 .00 RPM | 0 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018826 | 1 retrocopy | |
Felis catus | ENSFCAG00000026530 | 1 retrocopy |
retro_fcat_223 ,
|
Macropus eugenii | ENSMEUG00000013597 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009064 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002621 | 1 retrocopy |