RetrogeneDB ID: retro_meug_307

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold100290:7234..8029(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000013597
• Aliases: None
• Description: None

Sequence

>retro_meug_307
AATCTAAAAGCAGATCCAGAAAAGCTTTTTACAAAACTTGAAAAAATTGAAAAGATTCCTTTGGTGAAGTGTTTAAAGGC
ATCGACAATTGGGCTCAGAAAGTAGTTGCCATAAAAATCATTGATTTGGAAGAAGTAGAAGATCAAATTGAAGACATTCA
TCAAGAAATCACAATGCTGAGCCACAGTGACAGTCAATATGTCACCAAGTATTATGGATCTCATCTCAAGGATAGCAAAT
TGTGTATAATAATGGAATATCTTGATGAAAGCTCTGCATTAGATCTATTAGAACATGGGGTTCTAGATGAAATTCAGATT
GCTACTATATTAAGATAAATCTTTAAAGGAATCAATTATTTGCATTCAGAAAAGAAAATTCACCCTGATATCAAAGTTAC
AAATGTTCTGCTATTTGAACAAGGGAAAGTGAAACTTGCTAATTTTGAAATAGCCAGCAGCTTACAGATACCAGAATAAA
AGGAAACCCCTTTGTGGGCACCCCATTCTCAATGGTACCTGAAGTTATCATGCAGTCCACCTATGATTCAAAGGCATATA
TTGGGTCCTTGGGCACAGCAGCAAAAAAGCTGGCTAAAGGAGAACCTCCCCATTCATACCTGCATCCAATGAATTGTTAT
TCCTCATTCCAAAGAACAATTCACCAACCCTGAAAGGAAACTGTAGCAAGCCTCTCAAAGAATTTCTGGAGATCTGTCTA
AACAAGGAATCAAGCTTTAGACCTACAGCAAAGGAGTTGTTGAGACACAAATTTATAATAAGGAATGCAAAGAAA

Alignment

ORF - retro_meug_307 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.17 %
• Parental protein coverage: 67.51 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  NQRTDPEELFTKLERIGK-GSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYVT
          N...DPE.LFTKLE.I.K..SFGEVFKGIDN..Q.VVAIKIIDLEE.ED.IEDI.QEIT.LS..DS.YVT
Retrocopy NLKADPEKLFTKLEKIEK<DSFGEVFKGIDNWAQKVVAIKIIDLEEVEDQIEDIHQEITMLSHSDSQYVT

Parental  KYYGSYLKXXXXXXXXXXXXXXXXXXXLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLS
          KYYGS.LK...................L..G..DE.QIAT.L..I.KG..YLHSEKKIH.DIK..NVLL.
Retrocopy KYYGSHLKDSKLCIIMEYLDESSALDLLEHGVLDEIQIATILR*IFKGINYLHSEKKIHPDIKVTNVLLF

Parental  EQGDVKLADFGVAG-QLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDM
          EQG.VKLA.F..A..QLTDT.IK.N.FVGTPF.M.PEVI.QS.YDSKA.I.SLG..A..LAKGEPP.S..
Retrocopy EQGKVKLANFEIAS<QLTDTRIKGNPFVGTPFSMVPEVIMQSTYDSKAYIGSLGTAAKKLAKGEPPHSYL

Parental  HPM-RVLFLIPKNNPPTLLGDFTKPFKEFTDACLNKDPSFRPTAKELLKHKFIIKNAKK
          HPM...LFLIPKNN.PTL.G...KP.KEF...CLNK..SFRPTAKELL.HKFII.NAKK
Retrocopy HPM<ELLFLIPKNNSPTLKGNCSKPLKEFLEICLNKESSFRPTAKELLRHKFIIRNAKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_307 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_307 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018826	1 retrocopy	retro_cfam_1067,
Felis catus	ENSFCAG00000026530	1 retrocopy	retro_fcat_223,
Macropus eugenii	ENSMEUG00000013597	1 retrocopy	retro_meug_307 ,
Microcebus murinus	ENSMICG00000009064	1 retrocopy	retro_mmur_527,
Otolemur garnettii	ENSOGAG00000002621	1 retrocopy	retro_ogar_2658,
Ochotona princeps	ENSOPRG00000000800	1 retrocopy	retro_opri_1165,