RetrogeneDB ID: | retro_fcat_282 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:186383022..186383477(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS11 | ||
Ensembl ID: | ENSFCAG00000014967 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:14050] |
Percent Identity: | 60.76 % |
Parental protein coverage: | 79.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MQVVRKTGSWLLWSWARSPTPGVVPGAPASTIRTGARQLQDAAAKQEVEEK-AAAPAPSRSSFSIYPPVP |
MQVV...GSW.LWSWA..P.P.VV...P.S.I.TG..QLQDA.AKQEVE.K.A.A.A...S.FS..PP.P | |
Retrocopy | MQVVGRMGSWPLWSWAWLPMPRVVARVPTSIIHTGTQQLQDAVAKQEVEDK>AVAQASKSSNFS--PPFP |
Parental | GQESPLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLARASCGTEGFRNAKKGTGIAAQTAGIAAA- |
GQE..L.WA.KKFEEIPIA.IKASY.N..IQVVSA..Q.LA..S.G.E...NA.K...IAAQT.G...A. | |
Retrocopy | GQECSLTWA*KKFEEIPIAYIKASYKNMKIQVVSAMCQSLAGTS*GAERSQNARKVASIAAQT-GLSDA< |
Parental | AKAAGK-GVTHIRVVVKG |
.KA.G..GV.H..VVVKG | |
Retrocopy | EKAEGR<GVIHTSVVVKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .35 RPM |
SRP017611_liver | 0 .00 RPM | 2 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013012 | 2 retrocopies | |
Felis catus | ENSFCAG00000014967 | 1 retrocopy |
retro_fcat_282 ,
|
Homo sapiens | ENSG00000181991 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015152 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013659 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011441 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008247 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006751 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007420 | 1 retrocopy |