RetrogeneDB ID: | retro_fcat_284 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:189264151..189264415(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FXYD4 | ||
Ensembl ID: | ENSFCAG00000022417 | ||
Aliases: | None | ||
Description: | FXYD domain containing ion transport regulator 4 [Source:HGNC Symbol;Acc:4028] |
Percent Identity: | 85.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKRVTRALLVTLAGLPALEANDLVDKDSPFYYDWESLQLGGMIVGGLLCIAGILIALSGKCKCKYNKKHS |
MKRVT..LL.T.AGLPALE.NDLVDKDSPF.YDWESL.LGGMIVGGLLCIAGILIALS..CKCKY.KKHS | |
Retrocopy | MKRVTWGLLLTRAGLPALETNDLVDKDSPFSYDWESLELGGMIVGGLLCIAGILIALSRSCKCKYSKKHS |
Parental | PLPERATPLITPGSASTC |
PLPERA.PLITP..ASTC | |
Retrocopy | PLPERAAPLITPDPASTC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .15 RPM |
SRP017611_liver | 0 .00 RPM | 0 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000024923 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017385 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010030 | 4 retrocopies | |
Felis catus | ENSFCAG00000022417 | 2 retrocopies |
retro_fcat_284 , retro_fcat_990,
|
Monodelphis domestica | ENSMODG00000027578 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006722 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016033 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014460 | 3 retrocopies |