RetrogeneDB ID: | retro_fcat_386 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:90779530..90780034(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRAS2 | ||
Ensembl ID: | ENSFCAG00000009578 | ||
Aliases: | None | ||
Description: | related RAS viral (r-ras) oncogene homolog 2 [Source:HGNC Symbol;Acc:17271] |
Percent Identity: | 89.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYK |
SYFVTDYDPTIEDSYTKQCVID.RAA.LDILDTA.QEEFGA.REQY.R.G.G.LLVFSVTDRGSFEEI.K | |
Retrocopy | SYFVTDYDPTIEDSYTKQCVIDERAAQLDILDTAEQEEFGALREQYLRAG*GLLLVFSVTDRGSFEEICK |
Parental | FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR |
FQRQILRVKDRDEFPMIL.GNKADLDHQRQVTQEEGQQL.RQLKVTYMEASA.I.MNVDQAFHE.VRVIR | |
Retrocopy | FQRQILRVKDRDEFPMILTGNKADLDHQRQVTQEEGQQLTRQLKVTYMEASAEIAMNVDQAFHERVRVIR |
Parental | KFQEQECPPSPEPTRKEKDKKGCHCVIF |
KF..QECPPS.EPTRKE.DKKGCHCVIF | |
Retrocopy | KFPDQECPPSAEPTRKEEDKKGCHCVIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .18 RPM |
SRP017611_liver | 0 .00 RPM | 2 .83 RPM |