RetrogeneDB ID: | retro_mmul_1604 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:47072633..47072994(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.12834 | ||
Ensembl ID: | ENSMMUG00000000664 | ||
Aliases: | None | ||
Description: | ras-related protein R-Ras2 [Source:RefSeq peptide;Acc:NP_001247489] |
Percent Identity: | 69.35 % |
Parental protein coverage: | 59.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IEDSYTKQCVIDDRAARLDILDTAGQEEF-GAMREQYMRTGEGFLLVFSVTDR-GSFEEIYKFQRQIL-R |
IED..TKQCV.D.RAA.L..L.T.GQEE..GAM.EQ.MRTGEGFLL.FS.TD..G.FEE.YKFQRQIL.R | |
Retrocopy | IEDTNTKQCVPDGRAAWLGVL*TTGQEEM<GAMKEQCMRTGEGFLLIFSGTDE<GGFEETYKFQRQILLR |
Parental | VKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQA |
VK...EFPMI..GNKA.LDH.RQ.TQE..Q.LA.Q.KV.YME.SAKIRMN...A | |
Retrocopy | VKEHGEFPMIFMGNKAALDHERQETQEK-QHLAQQGKVIYMEVSAKIRMNAEGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .82 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .20 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .97 RPM |
SRP007412_heart | 0 .00 RPM | 12 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .30 RPM |
SRP007412_liver | 0 .00 RPM | 8 .91 RPM |
SRP007412_testis | 0 .04 RPM | 12 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3043 |