RetrogeneDB ID: | retro_fcat_432 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:87806558..87806928(+) | ||
Located in intron of: | ENSFCAG00000028482 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000024782 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022573 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.4 % |
Parental protein coverage: | 91.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEVAVYQLHNFNISFFSSLLGGDVVSVKLDNSASGASVVAIDN-KIEQAMDLVKNHLMYAVREEVEILKE |
M...V.QL..F.ISF.SSLL.....SV.LDNS..GASVVAIDN.KIEQAMDLVK.HLMY.VREEVE.LKE | |
Retrocopy | MDLGVHQLRHFSISFLSSLLETENASVRLDNSSLGASVVAIDN>KIEQAMDLVKSHLMYVVREEVETLKE |
Parental | QIRELVEKNSQLERENTLLKTLASPEQLEKFQSRL-SPEEPVPETPHAPEAPGGS |
QI.EL.EKNS.LE.EN.LLKTLASPEQL..FQ..L.....PV...P.A..A..GS | |
Retrocopy | QIKELIEKNS-LEQENNLLKTLASPEQLAQFQAQLQTGSRPVTSQPPAQPAFQGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 9 .07 RPM | 71 .85 RPM |
SRP017611_kidney | 5 .67 RPM | 66 .27 RPM |
SRP017611_liver | 1 .72 RPM | 59 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000022573 | 1 retrocopy |
retro_fcat_432 ,
|
Mustela putorius furo | ENSMPUG00000001671 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032050 | 1 retrocopy |