RetrogeneDB ID: | retro_fcat_661 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:152748506..152748905(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000029750 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB7A | ||
Ensembl ID: | ENSFCAG00000022971 | ||
Aliases: | None | ||
Description: | RAB7A, member RAS oncogene family [Source:HGNC Symbol;Acc:9788] |
Percent Identity: | 93.23 % |
Parental protein coverage: | 64.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY |
VAFYRGADCCVLVFDVTAPNTF.TLDSWRDEFLIQASPRDPENFP.VVLGNKIDLENRQVATKRAQAWCY | |
Retrocopy | VAFYRGADCCVLVFDVTAPNTFNTLDSWRDEFLIQASPRDPENFPLVVLGNKIDLENRQVATKRAQAWCY |
Parental | SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC |
SKNNIPYFETSAK.AINVEQ.FQ.IARNA.KQETE.ELYNEFP.PIKLDKNDRAKA.AESCSC | |
Retrocopy | SKNNIPYFETSAKDAINVEQGFQMIARNAPKQETEAELYNEFPKPIKLDKNDRAKALAESCSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 52 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 44 .62 RPM |
SRP017611_liver | 0 .00 RPM | 30 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000365 | 1 retrocopy | |
Felis catus | ENSFCAG00000022971 | 2 retrocopies |
retro_fcat_661 , retro_fcat_76,
|
Meleagris gallopavo | ENSMGAG00000007208 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008454 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017333 | 1 retrocopy | |
Mus musculus | ENSMUSG00000079477 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001645 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013431 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012247 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016787 | 1 retrocopy |