RetrogeneDB ID: | retro_fcat_699 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:39390344..39390585(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ELOF1 | ||
Ensembl ID: | ENSFCAG00000004926 | ||
Aliases: | None | ||
Description: | elongation factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28691] |
Percent Identity: | 62.79 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GRRKSKRKPPPKKKMT-GTLETQFTCPFCNHEK-SCDVKMDRARNTGVISCTVCLEEFQTPIT-YLSEPV |
G.R.S.RK.P..KKM..G.LE..FTCP.CNHEK..C..KMD.A.NT..IS.T.CLEE...PIT.YLSE.V | |
Retrocopy | GCRESERKCP-SKKME<GALEPHFTCPSCNHEK<VCEEKMDHASNTRIIS*TACLEESHKPIT>YLSEAV |
Parental | DV-YSDWIDACEAANQ |
DV.Y.D..DAC.AANQ | |
Retrocopy | DV<YRDETDACQAANQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .48 RPM |
SRP017611_liver | 0 .00 RPM | 2 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000064 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000020359 | 1 retrocopy | |
Felis catus | ENSFCAG00000004926 | 1 retrocopy |
retro_fcat_699 ,
|
Loxodonta africana | ENSLAFG00000001534 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000012101 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026211 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003687 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004812 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001807 | 1 retrocopy |