RetrogeneDB ID: | retro_fcat_703 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:50250760..50251084(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZBTB8OS | ||
Ensembl ID: | ENSFCAG00000000700 | ||
Aliases: | None | ||
Description: | zinc finger and BTB domain containing 8 opposite strand [Source:HGNC Symbol;Acc:24094] |
Percent Identity: | 76.85 % |
Parental protein coverage: | 58.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SGVSRV---VIMAQEEEDIRDYNLTEEQKAVKAKYPPVIRKYEYLDHTADVQLHAWGDTLEEAFEQCAMA |
SG..RV....IM.QEEEDIRDYNLTEE.K..KAKY.PVI.KY...D.TADV.LHA..DTLEEAFEQCAMA | |
Retrocopy | SGLKRVYNAAIMVQEEEDIRDYNLTEE*KTIKAKYLPVIGKYKCMDPTADVPLHAFRDTLEEAFEQCAMA |
Parental | MFGYMTDTGTVEPLQTLEVETQGDDLESLLFHFLDEWL |
MFGY.TDTGTVEP.QTLE.E.QGDDL.SLL.HFLDEWL | |
Retrocopy | MFGYITDTGTVEPVQTLERENQGDDLQSLLIHFLDEWL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .79 RPM |
SRP017611_liver | 0 .00 RPM | 9 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010550 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004061 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000015349 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000001861 | 2 retrocopies | |
Equus caballus | ENSECAG00000020982 | 1 retrocopy | |
Felis catus | ENSFCAG00000000700 | 1 retrocopy |
retro_fcat_703 ,
|
Homo sapiens | ENSG00000176261 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007519 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000745 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000009939 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017419 | 2 retrocopies | |
Mus musculus | ENSMUSG00000057572 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000940 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011630 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001589 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000014968 | 1 retrocopy |