RetrogeneDB ID: | retro_fcat_708 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:68715507..68716055(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000029637 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NTPCR | ||
Ensembl ID: | ENSFCAG00000014211 | ||
Aliases: | None | ||
Description: | nucleoside-triphosphatase, cancer-related [Source:HGNC Symbol;Acc:28204] |
Percent Identity: | 65.62 % |
Parental protein coverage: | 98.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | HHFFVFLPGVGKTTLIQKASEVLKSSGVPIDGFYTEEVRQAGRR-IGFDVVTLSGTRGVLSRIGYCSEPP |
H.F....PGVGKT.L.QKAS..LKSSGVP..GF........GR..IGF.VVT.S.T..V.SRIG..SEP. | |
Retrocopy | HVFLTGPPGVGKTALVQKASKILKSSGVPVNGF----TQKSGRK<IGFNVVTSSCTQEVWSRIG--SEPL |
Parental | PGKRECRVGQYVVDLTSFEQLALPVLRNAGSGSGPGQRVCVIDEIGKMELFSQPFIQAVRQTLSTPGT-V |
PGKR.C...QYVV.LT..EQ..LPVLR.AG...GPGQRVCV.DE.GK.EL.SQPF.QAV..TLSTPG..V | |
Retrocopy | PGKRQCGARQYVVYLTPSEQSPLPVLRSAGPSRGPGQRVCVMDETGKVELLSQPFVQAVHRTLSTPGV>V |
Parental | VLGTI-PVPKGKPLALVEEIRNRNDVQVFSVTKENRNRLLPDIVTCVQSGRQ |
.LGTI.P..KGKPLA.VEE.RNR.DV.V.SVTKENR..L.PD.VTCVQSGR. | |
Retrocopy | ILGTI<PTTKGKPLAFVEELRNRYDVRVYSVTKENRKHLSPDTVTCVQSGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .33 RPM |
SRP017611_liver | 0 .00 RPM | 16 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018274 | 1 retrocopy | |
Felis catus | ENSFCAG00000014211 | 1 retrocopy |
retro_fcat_708 ,
|
Homo sapiens | ENSG00000135778 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015198 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012614 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000108 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002116 | 1 retrocopy |