RetrogeneDB ID: | retro_fcat_72 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:120718428..120719064(-) | ||
Located in intron of: | ENSFCAG00000003086 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028193 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000029962 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.29 % |
Parental protein coverage: | 98.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FVCLDQMMLFGKISQQLCGLKKLPWSCDCRYFWGWLNAVFNKVDYERIRDVGPDRAASEWLLRCGAMVRY |
F....QMMLFGKISQQLCGLKKLPWSCDCRYFWGWLNAVF.KVDYERIRDVG.DRAASEWLL.CGAMVRY | |
Retrocopy | FLQCHQMMLFGKISQQLCGLKKLPWSCDCRYFWGWLNAVFHKVDYERIRDVGRDRAASEWLLHCGAMVRY |
Parental | HGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDYMEGLQHVEKIRLCKCHYIEDDCLEKLGKLE |
HGQERWQKDYN.LPTGPLDKYK.QAIDATDSCIMSIGFDY.EGL.HVEKIR..KCHYI..D.LEKLGKLE | |
Retrocopy | HGQERWQKDYNRLPTGPLDKYKVQAIDATDSCIMSIGFDYVEGLHHVEKIRPRKCHYIKEDYLEKLGKLE |
Parental | NLQKSVLEMEIISCGNVTDKGIIALYHLRNLKYLLLSDLPGVREKENIIRAFKTALPSLELKLDLK |
NLQKSVLEMEIISCGNVTDKGIIALYH.RNLKYLLLSDLPGVR.KEN.IR.FKTALPSLELKLDLK | |
Retrocopy | NLQKSVLEMEIISCGNVTDKGIIALYHSRNLKYLLLSDLPGVRKKENLIRGFKTALPSLELKLDLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 3 .33 RPM |
SRP017611_kidney | 0 .21 RPM | 5 .77 RPM |
SRP017611_liver | 0 .00 RPM | 1 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009828 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014285 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014471 | 1 retrocopy | |
Felis catus | ENSFCAG00000029962 | 1 retrocopy |
retro_fcat_72 ,
|
Loxodonta africana | ENSLAFG00000013773 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006173 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007707 | 1 retrocopy |