RetrogeneDB ID: | retro_fcat_730 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:117137302..117137764(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORMDL3 | ||
Ensembl ID: | ENSFCAG00000031660 | ||
Aliases: | None | ||
Description: | ORM1-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:16038] |
Percent Identity: | 58.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNMGMYIF-LHTVKG |
MNVG.AHSEV......MNS.G.W..Y....GLLH.V.LSIPF..V.VV.TLTN.IH...MY.F.L..VK. | |
Retrocopy | MNVGVAHSEVDASPCIMNSQGTWPPYASGAGLLHIVVLSIPFFIVSVVCTLTNIIHTLRMYGF>LDAVKR |
Parental | TPFETPDQGK-ARL-LTHWEQMDYGVQFTASRKFLTITPIVLYFLTSF-YTKYDQIHFILNTVSLM-SVL |
.PFETPD.GK.AR..L..W...D.GVQF..S.KF.T..PI.LY.L.S.....YD..HFILNT.SL...VL | |
Retrocopy | VPFETPDKGK>ARCPLIRWKHLDCGVQFKPSQKFRTVFPIILYYLASL<LSMYDPTHFILNTASLL<EVL |
Parental | IPKLPQLHGVRIFGINKY |
IP..P.LHGV.IFGIN.Y | |
Retrocopy | IPRMPKLHGVWIFGINEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 58 .95 RPM |
SRP017611_liver | 0 .00 RPM | 78 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000013964 | 1 retrocopy | |
Felis catus | ENSFCAG00000031660 | 1 retrocopy |
retro_fcat_730 ,
|
Macropus eugenii | ENSMEUG00000000957 | 3 retrocopies | |
Mus musculus | ENSMUSG00000038150 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014339 | 1 retrocopy |