RetrogeneDB ID: | retro_meug_1234 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold336329:141..584(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORMDL3 | ||
Ensembl ID: | ENSMEUG00000000957 | ||
Aliases: | None | ||
Description: | ORM1-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:16038] |
Percent Identity: | 60.4 % |
Parental protein coverage: | 96.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AHSEVNPNTRVMNSRG-IWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFET |
AHSE.N.NT.V.NS....WL...L..GLLH....SIPF.S.PV.WTL.N...N...YIFL..VKGTPF.T | |
Retrocopy | AHSEINLNTQVINSLA<LWLTCALGVGLLHVATFSIPFFSIPVAWTLPNITCNLWIYIFLNAVKGTPFKT |
Parental | PDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQLHFILNTVSLMSVLIPKLPQLHG |
PDQ.K.RLLTHWEQ.D.G.QFT.S..F.TI..I...FL.S.YTKY...HF.LN...L..V.IP..PQLHG | |
Retrocopy | PDQDKIRLLTHWEQLD*GIQFTSSQRFFTIS*IIPCFLASIYTKYAPNHFMLNRIPLPTVVIPLMPQLHG |
Parental | VRIFGINKY |
V.IFGINKY | |
Retrocopy | VWIFGINKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000031660 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000957 | 3 retrocopies |
retro_meug_1234 , retro_meug_130, retro_meug_2052,
|
Macropus eugenii | ENSMEUG00000014896 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038150 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014339 | 1 retrocopy |