RetrogeneDB ID: retro_fcat_810

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B3:5276488..5276851(+)
• Located in intron of: ENSFCAG00000006087

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000005830
• Aliases: None
• Description: None

Sequence

>retro_fcat_810
AGGTTTGGGAGAGATGAGGATCCTGTCTGTCTGCAGCCAGATGATATTCCTTCTGAGACGTCTTCTGACCTGAGTAGAAT
GGCTGCCATGTATCTGGTAGATGTGGACCGAACTCCCGTTTACACGCACTATTTTGACATCAGTTATATTCCATCTACTG
TGTTCTTCTTCGATGGGCAGCACATGGAAGTGAATTAGGGGTCTCCTGATCACACTAAGTTTGTGGGAAGTTTCAAAACC
AAGCAAGACTTCATAGATGTGGTTGAAGTAATTTATCGAGGAGCAGTGAGGGGAAAGCTTATTGTCCAAAGTCTTACTGA
TCCCAAGAATATTCCCAAATGTGACCTTCTCTATCAAGACATT

Alignment

ORF - retro_fcat_810 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.6 %
• Parental protein coverage: 81.21 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTPVYTHYFDISYIPSTVFFFNGQHMKVDYGSPD
          RFGRDEDPVCLQ.DDI.S.TSSDLS.MAA.YLVDVD.TPVYTHYFDISYIPSTVFFF.GQHM.V..GSPD
Retrocopy RFGRDEDPVCLQPDDIPSETSSDLSRMAAMYLVDVDRTPVYTHYFDISYIPSTVFFFDGQHMEVN*GSPD

Parental  HTKFVGSFKTKQDFIDLVEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
          HTKFVGSFKTKQDFID.VEVIYRGA.RGKLIVQS..DPKNIPK.DLLYQDI
Retrocopy HTKFVGSFKTKQDFIDVVEVIYRGAVRGKLIVQSLTDPKNIPKCDLLYQDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.23 RPM	6.66 RPM
SRP017611_kidney	0.10 RPM	4.33 RPM
SRP017611_liver	0.20 RPM	4.45 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_810 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_810 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000005830	1 retrocopy	retro_fcat_810 ,
Myotis lucifugus	ENSMLUG00000013863	1 retrocopy	retro_mluc_868,
Mus musculus	ENSMUSG00000031723	1 retrocopy	retro_mmus_570,