RetrogeneDB ID: retro_mluc_868

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:14756254..14756702(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TXNL4B
• Ensembl ID: ENSMLUG00000013863
• Aliases: None
• Description: None

Sequence

>retro_mluc_868
ATGAGCTTTCTATTACCCAAGCTGACTAGCAAAAAAGAAGTCAACCAGGCAATAAAGCACACTGCAGAGGAGGTGTTGGT
TCTCAGGTTTGGGACAGACGAGGATACTGTCTGTCTGCACCTAGATGATATTCTTTCTAAGACCTCTTCTGACTTGAGTT
AAAATGGCTGCTATAAATATGGTGGGTGTGGACCAAATTCCAGTTTATACACACTATTTTGACATCAGTTATATTCCATC
TACTGTGTTTTTCTTCAATGGGCAGCATATGAAAGTGGATTATAGGTCTCCAGATCACTCTAAATTTGTGGGAAGTTTCA
AAACCAAACAAGACTTCATAGATTTGATTGAAGTAATTTATCAAGGAGCAATGAGAAGAAAACTTATTGTTCAAAGTCCA
ATTGATCCCAATAATATTCCCAAATATGACCTTCTCTATCAAGACATT

Alignment

ORF - retro_mluc_868 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.67 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSFLLPKLTSKKEVDEAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS-KMAAIYLVDVDQTPVY
          MSFLLPKLTSKKEV..AIK.TAE.VLVLRFG.DED.VCL.LDDILSKTSSDLS.KMAAI..V.VDQ.PVY
Retrocopy MSFLLPKLTSKKEVNQAIKHTAEEVLVLRFGTDEDTVCLHLDDILSKTSSDLS>KMAAINMVGVDQIPVY

Parental  THYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNI
          THYFDISYIPSTVFFFNGQHMKVDY.SPDH.KFVGSFKTKQDFIDLIEVIY.GAMR.KLIVQSPIDP.NI
Retrocopy THYFDISYIPSTVFFFNGQHMKVDYRSPDHSKFVGSFKTKQDFIDLIEVIYQGAMRRKLIVQSPIDPNNI

Parental  PKYDLLYQDI
          PKYDLLYQDI
Retrocopy PKYDLLYQDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_868 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000005830	1 retrocopy	retro_fcat_810,
Myotis lucifugus	ENSMLUG00000009188	1 retrocopy	retro_mluc_562,
Myotis lucifugus	ENSMLUG00000013863	1 retrocopy	retro_mluc_868 ,