RetrogeneDB ID:

retro_fcat_872

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B3:133220724..133221014(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LAMTOR2
Ensembl ID:ENSFCAG00000028596
Aliases:None
Description:late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 [Source:HGNC Symbol;Acc:29796]


Retrocopy-Parental alignment summary:






>retro_fcat_872
AACGAGGCAACTCTGGGTGGCTGCTCGGGTTACAGGGATGCTGATATCTGGGTCACCACGGCTATCACCATAAAATCTGG
GCCACTTACAACTGGAACAGAAACCACATATTTAATGAAGACAATCTCAAATTCATCCTCATGGACTACACAGAGGGCCG
TGTAGCCACCACTCGAGGGGCCAACCTAGCTCCGTGTATATTCCAAGAGAGCGTGGGCTTTGGAACGCTCAAGGCCAAAG
CCCAGGCCTTGATTCAGTAGCTGCGGGAGCCCTTCACCCAAACAGTGGCA

ORF - retro_fcat_872 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.62 %
Parental protein coverage: 78.4 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalNEGSLLAYSGYGDTDARVTAAIA-SNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYA
NE..L...SGY.D.D..VT.AI....IWA.Y..N.N..FNEDNLKFILMD..EGRVA.TR.ANL..C...
RetrocopyNEATLGGCSGYRDADIWVTTAIT<HKIWATYNWNRNHIFNEDNLKFILMDYTEGRVATTRGANLAPCIF-
ParentalKETVGFGMLKAKAQALVQYLEEPLTQVAA
.E.VGFG.LKAKAQAL.Q.L.EP.TQ..A
RetrocopyQESVGFGTLKAKAQALIQ*LREPFTQTVA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 15 .49 RPM
SRP017611_kidney 0 .00 RPM 21 .23 RPM
SRP017611_liver 0 .00 RPM 7 .48 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_872 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_872 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG000000091931 retrocopy
Felis catus ENSFCAG00000028596 1 retrocopy
retro_fcat_872 ,
Myotis lucifugus ENSMLUG000000238711 retrocopy
Mus musculus ENSMUSG000000280621 retrocopy
Otolemur garnettii ENSOGAG000000169532 retrocopies
Pteropus vampyrus ENSPVAG000000103281 retrocopy
Rattus norvegicus ENSRNOG000000199083 retrocopies
Tursiops truncatus ENSTTRG000000133441 retrocopy



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