RetrogeneDB ID:

retro_ggor_1340

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:17:27116327..27116900(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000236726
Ensembl ID:ENSGGOG00000027978
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1340
ATGCCGGCATCCCTGCTTGCAGCTGTGAAGGGGGCAGAAATCAGCGAGGTGACCTGGGCTGAGTCCCCGTAGTGGGTAGA
GGTGGCAGGAAGGGGATCTGAGGAGGAGAACAGGGGTCCTCCCGGTCTGTGCTTCTTCCCAGACACGGGAGCTGTAGAGG
GGACCTCTGCAGCAGATGCTAGGGGGGCCACTAGGTCCAGGCAGTCTTGGGACTTGGGTCTGTCCTGCTGTGCATCCATA
GTGGGTGCTTTAGAAACGGGAGGCCCACCCGAAGCCCCTGTTGCAAGTGAGGACAAAGTGTGGGAAGGCCGTGAGGGTCT
GCAGTCCGAGATGGCCTTGTCCTCAACGTGCGGTGCACTGTTGATTCGCTGAAATGCCGCCTCTTTTTCCAGGTGCAAGT
CTTCAGCCATGACCCGATACCCCAGCTCTAAGGGAGGTGGCAGCATCAAAGGCTCCCCTCGCCTGCGTGGCAGCAGGGGA
ATCTTGCGTCTACGGGGCCTAGAGTCCTGGGATCTGGGGGAGCCACCCCTTGGGGCGAGTGTCTGCCCTGGTGCTGTATC
TGCCACCTTCTCA

ORF - retro_ggor_1340 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.44 %
Parental protein coverage: 98.45 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPASKLAAVKGAGISEVTWVESQEWEELAGRGSEEENRGPGRLCFFADTGAVEGTSAADAMGSTRPRQSW
MPAS.LAAVKGA.ISEVTW.ES..W.E.AGRGSEEENRGP..LCFF.DTGAVEGTSAADA.G.TR.RQSW
RetrocopyMPASLLAAVKGAEISEVTWAESP*WVEVAGRGSEEENRGPPGLCFFPDTGAVEGTSAADARGATRSRQSW
ParentalDLGLSCCASIVGALETGGPPEAPVASDDKVWEGREGLQSVMALSSTCSALLLRWGSHPWGRVFALMAVTR
DLGLSCCASIVGALETGGPPEAPVAS.DKVWEGREGLQS.MALSSTC.ALL.R.......R.....A.TR
RetrocopyDLGLSCCASIVGALETGGPPEAPVASEDKVWEGREGLQSEMALSSTCGALLIR*NAASFSRCKS-SAMTR
ParentalRDSLRGGKGCCGSCGSQRTRPALLMRGLEA-DLGEPPLGASVCPGAVSAFFS
..S..GG....GS......R..L..RGLE..DLGEPPLGASVCPGAVSA.FS
RetrocopyYPSSKGGGSIKGSPRLRGSRGILRLRGLESWDLGEPPLGASVCPGAVSATFS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1340 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1340 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG00000027978 3 retrocopies
retro_ggor_1339, retro_ggor_1340 , retro_ggor_1609,



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