RetrogeneDB ID: retro_ggor_1340

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 17:27116327..27116900(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000236726
• Ensembl ID: ENSGGOG00000027978
• Aliases: None
• Description: None

Sequence

>retro_ggor_1340
ATGCCGGCATCCCTGCTTGCAGCTGTGAAGGGGGCAGAAATCAGCGAGGTGACCTGGGCTGAGTCCCCGTAGTGGGTAGA
GGTGGCAGGAAGGGGATCTGAGGAGGAGAACAGGGGTCCTCCCGGTCTGTGCTTCTTCCCAGACACGGGAGCTGTAGAGG
GGACCTCTGCAGCAGATGCTAGGGGGGCCACTAGGTCCAGGCAGTCTTGGGACTTGGGTCTGTCCTGCTGTGCATCCATA
GTGGGTGCTTTAGAAACGGGAGGCCCACCCGAAGCCCCTGTTGCAAGTGAGGACAAAGTGTGGGAAGGCCGTGAGGGTCT
GCAGTCCGAGATGGCCTTGTCCTCAACGTGCGGTGCACTGTTGATTCGCTGAAATGCCGCCTCTTTTTCCAGGTGCAAGT
CTTCAGCCATGACCCGATACCCCAGCTCTAAGGGAGGTGGCAGCATCAAAGGCTCCCCTCGCCTGCGTGGCAGCAGGGGA
ATCTTGCGTCTACGGGGCCTAGAGTCCTGGGATCTGGGGGAGCCACCCCTTGGGGCGAGTGTCTGCCCTGGTGCTGTATC
TGCCACCTTCTCA

Alignment

ORF - retro_ggor_1340 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.44 %
• Parental protein coverage: 98.45 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPASKLAAVKGAGISEVTWVESQEWEELAGRGSEEENRGPGRLCFFADTGAVEGTSAADAMGSTRPRQSW
          MPAS.LAAVKGA.ISEVTW.ES..W.E.AGRGSEEENRGP..LCFF.DTGAVEGTSAADA.G.TR.RQSW
Retrocopy MPASLLAAVKGAEISEVTWAESP*WVEVAGRGSEEENRGPPGLCFFPDTGAVEGTSAADARGATRSRQSW

Parental  DLGLSCCASIVGALETGGPPEAPVASDDKVWEGREGLQSVMALSSTCSALLLRWGSHPWGRVFALMAVTR
          DLGLSCCASIVGALETGGPPEAPVAS.DKVWEGREGLQS.MALSSTC.ALL.R.......R.....A.TR
Retrocopy DLGLSCCASIVGALETGGPPEAPVASEDKVWEGREGLQSEMALSSTCGALLIR*NAASFSRCKS-SAMTR

Parental  RDSLRGGKGCCGSCGSQRTRPALLMRGLEA-DLGEPPLGASVCPGAVSAFFS
          ..S..GG....GS......R..L..RGLE..DLGEPPLGASVCPGAVSA.FS
Retrocopy YPSSKGGGSIKGSPRLRGSRGILRLRGLESWDLGEPPLGASVCPGAVSATFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1340 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1340 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000027978	3 retrocopies	retro_ggor_1339, retro_ggor_1340 , retro_ggor_1609,