RetrogeneDB ID: retro_ggor_1609

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 22:8168061..8168643(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000007136
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENSG00000236726
• Ensembl ID: ENSGGOG00000027978
• Aliases: None
• Description: None

Sequence

>retro_ggor_1609
ATGCCCGCATCCATGCTTGCAGCTGGGAAGGGGGCAGGAATCAGCGAGGTGACCTGGGCTGAGTCCTGGGAATGGGAAGA
GGTGGCAGGAAGGGGATCTGAGGAGGAGAACAGGGGGCCTGGTGGTCTGTGCTTCTTCCCAGACATGGGAGCTGTAGAGG
GGACCCCTGCAGCAGATGCTAAGGGGGCCAGTAGGCCCAGGCAGTCTTGGGACTTGTGTGTCTCCTGCTGTGCATCCATA
CTGGGTGCTTTAGAAACCGCAGGCGGACCAGAAGCCCCTGTTGCAGGTGAGGACAAAGTGTGGGAAGGCCGTGAGGGTCT
GCAGTCCGAGATGGCCTGGTCCTCAACCTGCAGCGCACTGTTGATGCACTGGAATGCCGCCTCCTTCTCCCGGTCAAGGT
CTTCAACAGGGACCCGGTACCCCAGCTCTAAGGGAGGTGGCAGCATCAAAAGCTCCCCTCGCCTGCGTGGCAGCAGGGGA
AACTTGTGTGTACTGGGCCTAGAGGCCTCGGATGTGGAGGAGTCATTCCTGAGGGTGAGTGTCTGCCCTGGTGCTATATC
TGCTCCCTTTTCACACTGGGTG

Alignment

ORF - retro_ggor_1609 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.64 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPASKLAAVKGAGISEVTWVESQEWEELAGRGSEEENRGPGRLCFFADTGAVEGTSAADAMGSTRPRQSW
          MPAS.LAA.KGAGISEVTW.ES.EWEE.AGRGSEEENRGPG.LCFF.D.GAVEGT.AADA.G..RPRQSW
Retrocopy MPASMLAAGKGAGISEVTWAESWEWEEVAGRGSEEENRGPGGLCFFPDMGAVEGTPAADAKGASRPRQSW

Parental  DLGLSCCASIVGALETGGPPEAPVASDDKVWEGREGLQSVMALSSTCSALLLRWGSHPWGRVFALMAVTR
          DL..SCCASI.GALET.G.PEAPVA..DKVWEGREGLQS.MA.SSTCSALL..W......R.......TR
Retrocopy DLCVSCCASILGALETAGGPEAPVAGEDKVWEGREGLQSEMAWSSTCSALLMHWNAASFSRSRSSTG-TR

Parental  RDSLRGGKGCCGSCGSQRTRPALLMRGLEA-DLGEPPLGASVCPGAVSAFFSQWL
          ..S..GG.....S......R..L...GLEA.D..E..L..SVCPGA.SA.FS.W.
Retrocopy YPSSKGGGSIKSSPRLRGSRGNLCVLGLEASDVEESFLRVSVCPGAISAPFSHWV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	6.22 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1609 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1609 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000027978	3 retrocopies	retro_ggor_1339, retro_ggor_1340, retro_ggor_1609 ,