RetrogeneDB ID:

retro_ggor_1470

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:19:21649822..21650137(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SYNJ2BP
Ensembl ID:ENSGGOG00000014492
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1470
ATGTTTGCACCCGCAGTGATGCGTGCTTTGCACAAGAATAAGACTCTCCAGTACGAAGTCCCCATGTTGTTGCTAATTGT
TAGAGTTTCTTTTGGTGTTCGTGAGTTTTTACAAATCTGACATGATGCTGTGAAGATGAAAATTGATCCTGAGTTGGAAA
AAAACTGAAAGCAAATAGTATCATTAGAATCAGAATATGAGAAAATAAAAGACTCCACTTTTGATAACTGGAAGAATATC
CAAGGACCCAAGCCTTGGAAAGATCCTGACCTCCTCCAAGAAAGGAATCCAGAAACCCTTAAGACTAAGACAACT

ORF - retro_ggor_1470 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.47 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMLAPAVMRAFRKNKTLRYGVPMLLLIVGGSFGLREFSQIRYDAVKSKMDPELEKKLKENKISLESEYEKI
M.APAVMRA..KNKTL.Y.VPMLLLIV..SFG.REF.QI..DAVK.K.DPELEK..K....SLESEYEKI
RetrocopyMFAPAVMRALHKNKTLQYEVPMLLLIVRVSFGVREFLQI*HDAVKMKIDPELEKN*KQI-VSLESEYEKI
ParentalKDSKFDDWKNIRGPRPWEDPDLLQGRNPESLKTKTT
KDS.FD.WKNI.GP.PW.DPDLLQ.RNPE.LKTKTT
RetrocopyKDSTFDNWKNIQGPKPWKDPDLLQERNPETLKTKTT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .10 RPM 15 .59 RPM
SRP007412_cerebellum 0 .08 RPM 14 .70 RPM
SRP007412_heart 0 .00 RPM 14 .17 RPM
SRP007412_kidney 0 .00 RPM 37 .45 RPM
SRP007412_liver 0 .03 RPM 26 .48 RPM
SRP007412_testis 0 .10 RPM 32 .12 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1470 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1470 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2038
Pan troglodytes retro_ptro_1355

Parental genes homology:
Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000075861 retrocopy
Cavia porcellus ENSCPOG000000239671 retrocopy
Gorilla gorilla ENSGGOG00000014492 1 retrocopy
retro_ggor_1470 ,
Mus musculus ENSMUSG000000909353 retrocopies
Oryctolagus cuniculus ENSOCUG000000085591 retrocopy



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