RetrogeneDB ID: retro_ggor_191

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 5:42859503..42859983(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000008319
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: KRTAP9-9
• Ensembl ID: ENSGGOG00000001293
• Aliases: None
• Description: None

Sequence

>retro_ggor_191
ATGACCCACTGTTGCTCCCCTTGCTGTCAGCCTACATGCTGCAGGACAACCTGCTGGCAGCCCACCACTGTGACCACCTG
CAGCAGCACACCCTGTTGCCAGCCCTCCTGCTGTGTTTCCAGCTGCTGCCAGCCTTGCTGCCGCCCAACTTGCTGTCAAA
ACACCTGCTGTAGGACCACCTGCTGCCAGCCCATCTGTGTGACCAGCTGCTGCCAGCCTTCCTGCTGCAGCACACCCTGC
TGCCAGCCCACATGCTGTGGGTCCAGCTGTGACCAGAGCAGCTCCTGTGCACCTGTGTACTGCAGAAGAACCTGCTACTA
CCCCACGACTGTCTGTCTGCCTGGTTGCCTAAACCAGAGCTGTGGCTCCAACTGCTGCCAGCCCTGCTGCCGCCCAGCCT
GCTGTGAGACCACCTGCTGCAGGACCACTTGCTTCCAGCCCACCTGTGTGTCCAGCTGCTGCCAGCCTTCTTGCTGCTAA

Alignment

ORF - retro_ggor_191 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.71 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTHCCSPCCQPTCCRTTCWQPTIVTTCSSTPCCQPSCCVSSCCQPCCHPTCCQNTCCRTTCCQPTCVTSC
          MTHCCSPCCQPTCCRTTCWQPT.VTTCSSTPCCQPSCCVSSCCQPCC.PTCCQNTCCRTTCCQP.CVTSC
Retrocopy MTHCCSPCCQPTCCRTTCWQPTTVTTCSSTPCCQPSCCVSSCCQPCCRPTCCQNTCCRTTCCQPICVTSC

Parental  CQPSCCSTPCCQPTCCGSSCCQPSSCAPVYCRRTCYHPTSVCLPGCLNQSCGSSCCQPCCRPACCETTCC
          CQPSCCSTPCCQPTCCGSSC.Q.SSCAPVYCRRTCY.PT.VCLPGCLNQSCGS.CCQPCCRPACCETTCC
Retrocopy CQPSCCSTPCCQPTCCGSSCDQSSSCAPVYCRRTCYYPTTVCLPGCLNQSCGSNCCQPCCRPACCETTCC

Parental  RTTCFQPTSVISCCQPSCC
          RTTCFQPT.V.SCCQPSCC
Retrocopy RTTCFQPTCVSSCCQPSCC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_191 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_191 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000001293	1 retrocopy	retro_ggor_191 ,
Nomascus leucogenys	ENSNLEG00000010581	1 retrocopy	retro_nleu_110,