RetrogeneDB ID: retro_nleu_110

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL400745.1:6095..6620(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000018665
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: KRTAP9-1
• Ensembl ID: ENSNLEG00000010581
• Aliases: None
• Description: None

Sequence

>retro_nleu_110
ATGACCCACTGTTGCTCCCCTTGCTGTCAGCCTACGTGCTGCAGGACCACCTGCTGCAGGACCACCTGCTGGAAGCCCAC
AACTGTGACCACCTGCAGTAGCACACCCTGCTGCCAGCCCTCCTGCTGTGTGTCCAGTTGCTGCCAGCCTTGCTGTCACC
CAACTTGCTGTCAAAACACCTGCTGCAGGACCACCTGCTGCCAGCCCACCTGTGTGACCAGCTGCTGCCAGCCTTCCTGC
TGCAGCACACCCTGCTGCCAGCCCACCTGCTGTGGGTCCAGCTGCTGTGGCCAAACCAGCTGTGGGTCCAGCTGTTGCCA
GAGCAGCTCCTGTGCACCTGTGTACTGCAGAAGAACCTGCTACTACCCCACGACTGTCTGCCTGCCTGGTTGCCTAAACC
AGAACTGTGGCTCCAGCTGCTGCCAGCCCTGCTGCCGCCCAGCCTGCTGTGAGACCACCTGCTGCAGGACCACTTGCTTC
CAGCCCACCTGTGTGTCCAGCTGCTGCCAGCCTTCTTGCTGCTGA

Alignment

ORF - retro_nleu_110 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.57 %
• Parental protein coverage: 68.92 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTHCCSPCCQPTCCRTTCCRTTCWKPTTVTTCSSAPCCQPSCCVSSCCQPCCHPTCCQNTCCRTTCCQPT
          MTHCCSPCCQPTCCRTTCCRTTCWKPTTVTTCSS.PCCQPSCCVSSCCQPCCHPTCCQNTCCRTTCCQPT
Retrocopy MTHCCSPCCQPTCCRTTCCRTTCWKPTTVTTCSSTPCCQPSCCVSSCCQPCCHPTCCQNTCCRTTCCQPT

Parental  CVTSCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQSSCVSS--CCQPCCHPTCCQNTCCRTTCCQPTC
          CVTSCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQSS......C...C..PT......C....C...C
Retrocopy CVTSCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQSSSCAPVYCRRTCYYPTTVCLPGCLNQNCGSSC

Parental  CQPSCCSTPCCQPTCCGSSCCQPCCHPTCCQNTCC
          CQP.CC...CC..TCC...C.QP.C...CCQ..CC
Retrocopy CQP-CCRPACCETTCCRTTCFQPTCVSSCCQPSCC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_110 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000001293	1 retrocopy	retro_ggor_191,
Nomascus leucogenys	ENSNLEG00000010581	1 retrocopy	retro_nleu_110 ,