RetrogeneDB ID: retro_ggor_260

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 1:86340606..86340879(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000023252
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TXN2
• Ensembl ID: ENSGGOG00000028091
• Aliases: None
• Description: None

Sequence

>retro_ggor_260
AACAGTGAGACGCCAGTGCTTGTGGATTTCCACGCACAGTGGTGTGGACCCTGCAAGATCCTGGGGCTGAGGTTAGAGAA
GATGGTGGTCAAGCAGCATAGGAAAGTGCTGATGGCCAAGGTGGATATTGATGACCACACAGACCTCGCCATTGAGTATG
AGGTGTTGGTGGTGCCCACTGTGCTGGCCATGAAGAATGGGGATGTGGTGGACAAGTTTGTGGGCATCAAAGATGAGGAT
CAGCTGGAGGCCTTCCTGAAGAAGCCGATTGGC

Alignment

ORF - retro_ggor_260 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.21 %
• Parental protein coverage: 54.82 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVV
          NSETPV.VDFHAQWCGPCKILG.RLEKMV.KQH.KV.MAKVDIDDHTDLAIEYEV..VPTVLAMKNGDVV
Retrocopy NSETPVLVDFHAQWCGPCKILGLRLEKMVVKQHRKVLMAKVDIDDHTDLAIEYEVLVVPTVLAMKNGDVV

Parental  DKFVGIKDEDQLEAFLKKLIG
          DKFVGIKDEDQLEAFLKK.IG
Retrocopy DKFVGIKDEDQLEAFLKKPIG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	45.70 RPM
SRP007412_cerebellum	0.20 RPM	38.85 RPM
SRP007412_heart	0.06 RPM	45.15 RPM
SRP007412_kidney	0.04 RPM	63.66 RPM
SRP007412_liver	0.00 RPM	61.49 RPM
SRP007412_testis	0.00 RPM	35.74 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_260 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_260 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000013929	1 retrocopy	retro_ecab_229,
Erinaceus europaeus	ENSEEUG00000010654	2 retrocopies	retro_eeur_554, retro_eeur_67,
Homo sapiens	ENSG00000100348	1 retrocopy	retro_hsap_179,
Gorilla gorilla	ENSGGOG00000028091	1 retrocopy	retro_ggor_260 ,
Myotis lucifugus	ENSMLUG00000015841	1 retrocopy	retro_mluc_483,
Monodelphis domestica	ENSMODG00000000837	2 retrocopies	retro_mdom_1125, retro_mdom_13,
Pteropus vampyrus	ENSPVAG00000002012	1 retrocopy	retro_pvam_1431,
Sarcophilus harrisii	ENSSHAG00000000670	1 retrocopy	retro_shar_61,
Tursiops truncatus	ENSTTRG00000006612	1 retrocopy	retro_ttru_438,