RetrogeneDB ID: | retro_ggor_2627 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:125972024..125972646(-) | ||
Located in intron of: | ENSGGOG00000009614 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CD2BP2 | ||
Ensembl ID: | ENSGGOG00000014271 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.17 % |
Parental protein coverage: | 60.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RQASDSEEEDGLGQTPMSAQALLEGLLELLLPRETVAGALRRLGARGGGKGS-KGPGRPSSPQRLDRLSG |
RQASD.EEED.LGQTP.SAQA.LEGLLELLLPRETVA.A.RRLGARGGGKGS.KGPG.PSSPQ..DRLS. | |
Retrocopy | RQASDLEEEDSLGQTPVSAQAFLEGLLELLLPRETVARARRRLGARGGGKGSSKGPG*PSSPQCPDRLSE |
Parental | LADQMVARGNLGVYQETRERLAMRLKGLGCQTL-GPHNPTPPPSLDMFAEEVAEEELETPTPTQRGEAES |
LADQMVA.GNLG.YQETRE.LAMRLKGLGCQ.L.G..........DMFAEEVAE.EL.TPTPTQRGEAE. | |
Retrocopy | LADQMVAQGNLGMYQETREQLAMRLKGLGCQAL>GXXXXXXXXXXDMFAEEVAEVELQTPTPTQRGEAEL |
Parental | RGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT |
.GDGLVDVMWEYKWEN.GDAEL.GPFTS.QMQTWVSEGYFPDGVYCRKLDP..GQFYNSKRIDFDLYT | |
Retrocopy | PGDGLVDVMWEYKWENPGDAELHGPFTSDQMQTWVSEGYFPDGVYCRKLDPLRGQFYNSKRIDFDLYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 76 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 65 .01 RPM |
SRP007412_heart | 0 .03 RPM | 32 .55 RPM |
SRP007412_kidney | 0 .00 RPM | 66 .44 RPM |
SRP007412_liver | 0 .18 RPM | 26 .17 RPM |
SRP007412_testis | 0 .00 RPM | 38 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3900 |
Pan troglodytes | retro_ptro_2653 |
Pongo abelii | retro_pabe_3179 |
Macaca mulatta | retro_mmul_1735 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000169217 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014271 | 1 retrocopy |
retro_ggor_2627 ,
|
Macaca mulatta | ENSMMUG00000021844 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015767 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007267 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007995 | 1 retrocopy |