RetrogeneDB ID:

retro_ggor_2627

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:125972024..125972646(-)
Located in intron of:ENSGGOG00000009614
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CD2BP2
Ensembl ID:ENSGGOG00000014271
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2627
CGCCAGGCCTCAGACTTGGAAGAGGAGGACAGCTTGGGCCAGACCCCAGTGAGTGCCCAAGCCTTCTTGGAGGGACTTTT
GGAGCTCCTATTGCCTAGAGAGACAGTGGCTAGGGCACGGAGGCGTCTGGGGGCCCGAGGAGGAGGCAAAGGGAGCAGCA
AGGGGCCTGGGTGACCCAGTTCCCCGCAGTGCCCAGACCGGCTCTCCGAATTGGCCGACCAGATGGTGGCCCAGGGAAAC
CTTGGCATGTACCAGGAAACGAGGGAACAGTTGGCCATGCGGCTGAAGGGTTTGGGGTGCCAGGCCCTAGGGACCCCACA
ATCCCACACCCCCACACTCCCTAGACATGTTCGCTGAGGAAGTGGCGGAGGTGGAACTACAGACCCCAACCCCTACCCAG
AGAGGAGAAGCAGAGTTGCCAGGAGATGGTCTGGTGGATGTGATGTGGGAATATAAGTGGGAGAACCCGGGGGATGCCGA
GCTGCATGGGCCCTTCACCAGCGACCAGATGCAGACCTGGGTGAGCGAAGGCTACTTTCCTGATGGTGTTTATTGCCGGA
AGCTGGACCCCCTTCGTGGCCAGTTCTACAACTCCAAACGCATTGACTTTGACCTCTACACC

ORF - retro_ggor_2627 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.17 %
Parental protein coverage: 60.41 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRQASDSEEEDGLGQTPMSAQALLEGLLELLLPRETVAGALRRLGARGGGKGS-KGPGRPSSPQRLDRLSG
RQASD.EEED.LGQTP.SAQA.LEGLLELLLPRETVA.A.RRLGARGGGKGS.KGPG.PSSPQ..DRLS.
RetrocopyRQASDLEEEDSLGQTPVSAQAFLEGLLELLLPRETVARARRRLGARGGGKGSSKGPG*PSSPQCPDRLSE
ParentalLADQMVARGNLGVYQETRERLAMRLKGLGCQTL-GPHNPTPPPSLDMFAEEVAEEELETPTPTQRGEAES
LADQMVA.GNLG.YQETRE.LAMRLKGLGCQ.L.G..........DMFAEEVAE.EL.TPTPTQRGEAE.
RetrocopyLADQMVAQGNLGMYQETREQLAMRLKGLGCQAL>GXXXXXXXXXXDMFAEEVAEVELQTPTPTQRGEAEL
ParentalRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT
.GDGLVDVMWEYKWEN.GDAEL.GPFTS.QMQTWVSEGYFPDGVYCRKLDP..GQFYNSKRIDFDLYT
RetrocopyPGDGLVDVMWEYKWENPGDAELHGPFTSDQMQTWVSEGYFPDGVYCRKLDPLRGQFYNSKRIDFDLYT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 76 .63 RPM
SRP007412_cerebellum 0 .00 RPM 65 .01 RPM
SRP007412_heart 0 .03 RPM 32 .55 RPM
SRP007412_kidney 0 .00 RPM 66 .44 RPM
SRP007412_liver 0 .18 RPM 26 .17 RPM
SRP007412_testis 0 .00 RPM 38 .12 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2627 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2627 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3900
Pan troglodytes retro_ptro_2653
Pongo abelii retro_pabe_3179
Macaca mulatta retro_mmul_1735

Parental genes homology:
Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001692171 retrocopy
Gorilla gorilla ENSGGOG00000014271 1 retrocopy
retro_ggor_2627 ,
Macaca mulatta ENSMMUG000000218441 retrocopy
Nomascus leucogenys ENSNLEG000000157671 retrocopy
Pongo abelii ENSPPYG000000072671 retrocopy
Pan troglodytes ENSPTRG000000079951 retrocopy



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