RetrogeneDB ID: | retro_ggor_2657 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:49227998..49228903(+) | ||
Located in intron of: | ENSGGOG00000014572 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BRIX1 | ||
Ensembl ID: | ENSGGOG00000004225 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.34 % |
Parental protein coverage: | 85.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAATKRKRRGGFAVQAKKPKRNEKDAEPPAKRHATAEEVEEEERNRIPG-PVCKGKWKNKERILIFSSRG |
MAATKRK..GG.AVQAK.P.R.EK.AE.PAK..ATA.EVEEE.R..IPG.P...G..K.......F.... | |
Retrocopy | MAATKRKQHGGVAVQAKNPERSEKEAEQPAKLGATAKEVEEEDRDWIPG>PFARGSEKTRNGFSSFLPEE |
Parental | -INFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKK-QDLYMWLSNSPHGP |
.INFRTRH.MQDLRMLMPHSKAD.KMDRK.K.F.I.E.CEMKNCNKCIYFEAKKK.QDL.M.LSNSPHGP | |
Retrocopy | *INFRTRHFMQDLRMLMPHSKADAKMDRKHK*FEISEFCEMKNCNKCIYFEAKKK>QDLFM*LSNSPHGP |
Parental | SAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFT |
SAKFLVQN.H.LAELKMTGN.LKGS.P....DPAFDEL.HYALLKELLIQIFSTP.YHPKSQPFV..V.T | |
Retrocopy | SAKFLVQNSHSLAELKMTGNLLKGSCPFC-LDPAFDELLHYALLKELLIQIFSTPWYHPKSQPFVGRVLT |
Parental | FTILDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKY |
FTILDN.IWF..F.I.EE..AL.EIGP.FVLNLI.I.QGSFGGPTLY.N..YQ.P.MH..VIRSIT.AKY | |
Retrocopy | FTILDNKIWFQKFYITEEGVALIEIGPCFVLNLINIIQGSFGGPTLYKNSLYQAPKMHCHVIRSITPAKY |
Parental | REKQQVKDVQKLRKKEPKTLLPHD |
RE.QQ.K.VQKLRKKEPK.LLPHD | |
Retrocopy | RENQQAKVVQKLRKKEPKILLPHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .54 RPM |
SRP007412_heart | 0 .09 RPM | 1 .19 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .81 RPM |
SRP007412_liver | 0 .00 RPM | 6 .38 RPM |
SRP007412_testis | 0 .00 RPM | 14 .09 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3954 |
Pan troglodytes | retro_ptro_2684 |
Pongo abelii | retro_pabe_3258 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001790 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000018506 | 1 retrocopy | |
Homo sapiens | ENSG00000113460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004225 | 1 retrocopy |
retro_ggor_2657 ,
|
Loxodonta africana | ENSLAFG00000007249 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000029255 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000442 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020386 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014452 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014827 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015390 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016784 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018021 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011652 | 9 retrocopies |