Parental gene:

BRIX1, ENSCJAG00000018506

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:168655069..168664771(-)


>ENSCJAG00000018506
ATGGCGGCAACCAAGAGGAAACGGCGTGGAGGCTTGGCAGTTCAGGCGAAGAAACCGAAAAGAAACGAGAAAGATGCCGA
ACCGCCAGCTAAGCCTCGAGCCACTGCAGAGGAGGTGGAGGAAGAAGAGAGAAACCGGATCCCAGGCCCCGTTTGCAAGG
GCAAATGGAAAAATAAGGAACGGATTCTCATCTTTTCTTCCAGAGGGATAAATTTCAGAACAAGACATTTAATGCAGGAC
TTGAGAAGGTTGATGCCTCATTCTAAAGCAGATACTAAAATGGATCGTAAGGATAAGCTATTTGTGATTAACGAGGTTTG
TGAAATGAAAAACTGTAATAAATGCATCTATTTTGAAGCTAAGAAAAAACAGGATCTCTATATGTGGCTTTCAAACTCAC
CTCATGGACCATCTGCTAAATTCCTTGTTCAAAATATTCATACCCTTGCTGAACTAAAGATGACTGGAAACTGTTTGAAA
GGTTCTCGGCCCCTTTTGTCTTTTGACCCGGCTTTTGATGAATTACCACATTATGCTTTGTTAAAAGAACTCTTAATTCA
GATCTTTAGTACACCACGGTATCATCCCAAAAGCCAACCATTCGTGGACCATGTGTTTACTTTCACGATTTTGGATAATA
GGATATGGTTTCGGAACTTTCAGATTATAGAAGAAGATGCTGCTCTTGTAGAAATAGGACCTCGTTTTGTCTTAAATCTC
ATAAAGATTTTCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAACCCTCACTACCAGTCACCAAACATGCATCGGCG
TGTCATAAGATCCATCACAGCTGCAAAATACAAAGAGAAACAGCAAGTGAAAGATGTGCAGAAACTGAGAAAGAAAGAAC
TGAAGACTCTTCTTCCACACGATCCCACTGCAGATGTTTTTGTTACGCCAGCCGACGAGAAACCAATAGAAATACAGTGG
GTAAAGCCAGAGCCAAAAGTTGATTTGAAAGCACGAAAGAAACGGATTTACAAAAGGCAAAGAAAAATGAAACAGAGGAT
GGACAGAAGGAAAACAAAATAA

Library Parental gene expression (RPM)
SRP051959_colon 9 .30 RPM
SRP051959_heart 11 .47 RPM
SRP051959_kidney 14 .80 RPM
SRP051959_liver 11 .33 RPM
SRP051959_lung 15 .37 RPM
SRP051959_lymph_node 16 .32 RPM
SRP051959_skeletal_muscle 12 .21 RPM
SRP051959_spleen 14 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001790 ortholog_one2many 2 retrogenes
retro_chof_1664, retro_chof_1776,
Homo sapiens ENSG00000113460 ortholog_one2one 1 retrogene
retro_hsap_3954,
Gorilla gorilla ENSGGOG00000004225 ortholog_one2one 1 retrogene
retro_ggor_2657,
Loxodonta africana ENSLAFG00000007249 ortholog_one2one 1 retrogene
retro_lafr_1116,
Myotis lucifugus ENSMLUG00000029255 ortholog_one2one 3 retrogenes
retro_mluc_1402, retro_mluc_707, retro_mluc_963,
Macaca mulatta ENSMMUG00000000442 ortholog_one2one 1 retrogene
retro_mmul_2289,
Monodelphis domestica ENSMODG00000020386 ortholog_one2one 1 retrogene
retro_mdom_1032,
Nomascus leucogenys ENSNLEG00000014452 ortholog_one2one 1 retrogene
retro_nleu_533,
Otolemur garnettii ENSOGAG00000014827 ortholog_one2one 2 retrogenes
retro_ogar_3116, retro_ogar_793,
Pongo abelii ENSPPYG00000015390 ortholog_one2one 2 retrogenes
retro_pabe_3258, retro_pabe_3379,
Pan troglodytes ENSPTRG00000016784 ortholog_one2one 1 retrogene
retro_ptro_2684,
Rattus norvegicus ENSRNOG00000018021 ortholog_one2one 1 retrogene
retro_rnor_1140,
Tupaia belangeri ENSTBEG00000011652 ortholog_one2one 9 retrogenes
retro_tbel_1963, retro_tbel_1964, retro_tbel_2981, retro_tbel_3002, retro_tbel_3082, retro_tbel_4194, retro_tbel_4229, retro_tbel_4418, retro_tbel_954,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1389 97.73 100.00
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Download FASTA sequences of all ENSCJAG00000018506 retrocopies