RetrogeneDB ID: retro_ggor_282

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 1:118642633..118643236(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CNOT7
• Ensembl ID: ENSGGOG00000015762
• Aliases: None
• Description: None

Sequence

>retro_ggor_282
CCAGCAGCAACTGTAGCTCATAGCCCAAGAATTTGTGAAGTTTGGGCTTGCAACTTGGATGAAGAGATGAAGAAAATTCG
TCAAGTTATCCGAAAATATCATTATGTTGCTGTGGACACCGAGTTTCCAGGTGTGGTTGCAAGACCTATTAGAGAATTGA
GGAGCAATCCTGACTATCAGTATCAACTATTGCGGTGTAATGTAGACTTGTTAAAGATAATTCAGCTAGGACTGACATTT
ATGAATGAGCAAGGTGAATACCCTCCAGGAACTTCAACTTGGCAGCTTAATTTTAAATTTAATTTGATGGAGGACATGCA
TGCCCAGCACTCTATAGAGCTACTAACAACATCTGATATCCAGTATAAAAAACATTAGGAGGAAGGAATTGAGACCCAGT
ACTTTGCTGAACTTATGACTTCGGGAGTGGTCCTCTGTGAAGGGGTCAAATGGTTGTCATTTCATAGCAGTTATGACTTT
GGCTATTTAATTAAAATCCTGACCAACTCTAACTTGCCTGAAGAAGAACTTGACTTCTTTGAGATCCTTCGACTGTTTTT
TCCTGTCATTTATGCTGTGAAGTAGCTCATGAAGAGCTGCAAA

Alignment

ORF - retro_ggor_282 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.09 %
• Parental protein coverage: 70.88 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL
          PAATV.HS.RICEVWACNLDEEMKKIRQVIRKY.YVA.DTEFPGVVARPI.E.RSN.DYQYQLLRCNVDL
Retrocopy PAATVAHSPRICEVWACNLDEEMKKIRQVIRKYHYVAVDTEFPGVVARPIRELRSNPDYQYQLLRCNVDL

Parental  LKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM
          LKIIQLGLTFMNEQGEYPPGTSTWQ.NFKFNL.EDM.AQ.SIELLTTS.IQ.KKH.EEGIETQYFAE.LM
Retrocopy LKIIQLGLTFMNEQGEYPPGTSTWQLNFKFNLMEDMHAQHSIELLTTSDIQYKKH*EEGIETQYFAE-LM

Parental  TSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCK
          TSGVVLCEGVKWLSFHS.YDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY.VK.LMKSCK
Retrocopy TSGVVLCEGVKWLSFHSSYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYAVK*LMKSCK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	24.41 RPM
SRP007412_cerebellum	0.00 RPM	24.35 RPM
SRP007412_heart	0.00 RPM	4.28 RPM
SRP007412_kidney	0.00 RPM	36.88 RPM
SRP007412_liver	0.00 RPM	22.32 RPM
SRP007412_testis	0.00 RPM	44.86 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_282 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_282 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_211

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000677	4 retrocopies	retro_chof_1431, retro_chof_1581, retro_chof_822, retro_chof_963,
Gorilla gorilla	ENSGGOG00000015762	2 retrocopies	retro_ggor_282 , retro_ggor_3027,
Monodelphis domestica	ENSMODG00000019055	2 retrocopies	retro_mdom_1898, retro_mdom_802,
Oryctolagus cuniculus	ENSOCUG00000014589	1 retrocopy	retro_ocun_118,
Sarcophilus harrisii	ENSSHAG00000011828	2 retrocopies	retro_shar_103, retro_shar_631,