>retro_ggor_377
GCAAATATGGCAGAAGTGTGGTGGCTTTGGCGTCTACTTTTGACCATAGTGGTGGCCCTGTTATTCGTGGCTCCCGGGGT
TCCTACACATCCTTCCTGATGGAAGAAGGCGTTGGCCAAAAAGGTCAGCCAGCTGATGGATTGGACCAAGAAAGACAGAG
TGATAAGAATGAGTGACACCATGTTCTATCATTTTGTATTAGATGCACCAAAAAACTATTCTGTTATTGTGATGCTTACT
GCTCTCCACGAGTTCAGTTCATGTGTCATGTGCAAAGGTGCTGCTGAGGAATTTCAGATCTTGGCAAATTCCTATCAACG
CCCTGGTGCATTCACCACAAAGGTATTTTTTGCAATGGTGGATTATGATGAAAGCCCTGAGGTCTTTGAAGCACTCCAGG
TAACGTCAGTTCCGACTTTCTTCCACTTTTCTGCCCAATGGAAATTTGCAACAGATGACATTTATAATTTGAGAGGAAGG
GATATTGTTGCTGACCAAATGGCTGAATGGGTAGCAGAAAGAACACATGTCAGCGTCAGAATCAGACAGCCTGCAAATTA
TCATGGTCTCCTCAAGCCAGGGATACTTCTGGCTCTCATTGGTGGACTTGGGTATTTCTTGAAATGGAATAGGAAATCTA
TTTCTTGCAGAATTTTGTGCGAAGTTTTAACTCTGTGCTTTGTGATTGTGATGACGTCTGGTCAAATGTGGACTTATGTA
AGAGGAGAACCATATGTCCAGAGGGACCCTCACACAGGACATAAACATTACATCAGTAAATTTAGTCAGGCTCAGTTTGC
AGCAGAAACATTCATTATTTCCCTGTTTAATATGTGTGTTAGTCTGGGAATGGTGCTGTTAGACAAGGCTGCCACCTCTA
CGATGAACATCATAAAGAGAAAGATGATGTGTCTGGCTGGTATGTGTCTTGTTGCCATATTCTTCAGTTGGCTGTTTTCC
CTCTTTAGATTTAAAGTACCTGACTATCCATACAGCTTTGTC
ORF - retro_ggor_377 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
52.08 % |
Parental protein coverage: |
91.28 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ANMAARWRFWCVSVTMAVALLIVCD-VPSASAQRKKEMVLSEKVSQLMEWTNKRPVIRMNGDKFRRLVKA |
| ANMA..W..W....T..VALL.V...VP......KK...L..KVSQLM.WT.K..VIRM....F...V.. |
Retrocopy | ANMAEVWWLWRLLLTIVVALLFVAPGVPTHPS*WKK--ALAKKVSQLMDWTKKDRVIRMSDTMFYHFVLD |
|
Parental | PPRNYSVIVMFTALQLHRQCVVCKQADEEFQILANSWRYSSAFTNRIFFAMVDFDEGSDVFQMLNMNSAP |
| .P.NYSVIVM.TAL.....CV.CK.A.EEFQILANS.....AFT...FFAMVD.DE...VF..L...S.P |
Retrocopy | APKNYSVIVMLTALHEFSSCVMCKGAAEEFQILANSYQRPGAFTTKVFFAMVDYDESPEVFEALQVTSVP |
|
Parental | TFINFPAKGKPKRGDTYELQVRGFSAEQIARWIADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLRR |
| TF..F.A..K....D.Y.L..R...A.Q.A.W.A.RT.V..R...P.NY.G.L..G.LLA.IGGL.Y... |
Retrocopy | TFFHFSAQWKFATDDIYNLRGRDIVADQMAEWVAERTHVSVRIRQPANYHGLLKPGILLALIGGLGYFLK |
|
Parental | SNMEFLFNKTGWAFAALCFVLAMTSGQMWNHIRGPPYAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNG |
| .N..............LCFV..MTSGQMW...RG.PY....PHTGH..YI...SQAQF.AET.I..LFN. |
Retrocopy | WNRKSISCRILCEVLTLCFVIVMTSGQMWTYVRGEPYVQRDPHTGHKHYISKFSQAQFAAETFIISLFNM |
|
Parental | GVTLGMVLLCEAATSDMDIGKRKIMCVAGIGLVVLFFSWMLSIFRSKYHGYPYSFL |
| .V.LGMVLL..AATS.M.I.KRK.MC.AG..LV..FFSW..S.FR.K...YPYSF. |
Retrocopy | CVSLGMVLLDKAATSTMNIIKRKMMCLAGMCLVAIFFSWLFSLFRFKVPDYPYSFV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .34 RPM |
6 .14 RPM |
SRP007412_cerebellum |
0 .16 RPM |
4 .53 RPM |
SRP007412_heart |
0 .03 RPM |
3 .00 RPM |
SRP007412_kidney |
0 .61 RPM |
26 .01 RPM |
SRP007412_liver |
0 .13 RPM |
19 .18 RPM |
SRP007412_testis |
17 .30 RPM |
19 .68 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_377 was not experimentally validated.
Retrocopy orthology:
Retrocopy
retro_ggor_377 has 1 orthologous retrocopies within
eutheria group
.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.