>retro_ocun_1807
TTGGATTCTGCCCAAAGAAAGACGGAGATGGTGTTATCTGAAAAGGTTAGTCAGCTGATGGAATGGACCAATAAAAGACC
TGTAATAAGAATGAATGCAGACAAGTTTTGTCATCTTGTTAAAGCTCCACCAAGAAATTACTCCGTTATTGTCATGTTCA
CTGCTCTCCAACTTCATAGACAGTGTGTTGTTTGCAAACAAGCTGATGAAGAATTCCAGATCCTGGCAAACTTGGCGATA
TTCCAGTGCATTTACCAACAGGATATTTTTTTGCCATGGTAGATTTTGATGAAGGTTCTGATGTATTTCAAATGCTAAAC
ATGAACTCGGCTCCAACTTTCATCAACTTTCCTGCAACAGGGAAACCCAAATGGGGCGATACATATGAGTTGCAGGTGCG
TGGTTTTTCAGCTGAGCAGATTGCCTGGTGGATTGCAGACAGAACTGATGTCAATATTAGAGTAATAGACCCCCAAATTA
TGCTGGTCCCCTTTTGTTGGGATTACTTTTGGCTGTTATTGGTGGACTTGTGTATCTTCGAAGAAGCAATATGGAATTTA
TCTTTAATAAAACTGGATGGGCTTTTGAAGCTTTGTGTTTTGTGCTTGCTATGACATCTGGTCAAATGTGGAACCATATA
AGAGGACCACCATATGCTCATAAGAATCCTCACATAGGACATGTGAATTATGTCCATGGAAGCAGCCAAGCCCAGTGTGT
GGCTGAAACACACATCGTTCTTCTGTTCAATGATGGGATTACCTTAGGGATGGTACTTTTATGTGAAGCTGCTACTTCTG
ACATGGATATTGGAAAGCAAAAGATAATGTGCGTAGCTGGTATTGCATTGGTTGTGTTATTCTTCAGTTGGATGCTGTCC
ATTTTCAGATCTAAATATCATGGGTATCCATACAGCTTTCTGATGAGT
ORF - retro_ocun_1807 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.38 % |
Parental protein coverage: |
92.54 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | LASAQRKKEMVLSEKVSQLMEWTNKRPVIRMNGDKFRRLVKAPPRNYSVIVMFTALQLHRQCVVCKQADE |
| L.SAQRK.EMVLSEKVSQLMEWTNKRPVIRMN.DKF..LVKAPPRNYSVIVMFTALQLHRQCVVCKQADE |
Retrocopy | LDSAQRKTEMVLSEKVSQLMEWTNKRPVIRMNADKFCHLVKAPPRNYSVIVMFTALQLHRQCVVCKQADE |
|
Parental | EFQILANSWRYSSAFTNRI-FFAMVDFDEGSDVFQMLNMNSAPTFINFPAKGKPKRGDTYELQVRGFSAE |
| EFQILAN...........I.FFAMVDFDEGSDVFQMLNMNSAPTFINFPA.GKPK.GDTYELQVRGFSAE |
Retrocopy | EFQILANLAIFQCIYQQDI<FFAMVDFDEGSDVFQMLNMNSAPTFINFPATGKPKWGDTYELQVRGFSAE |
|
Parental | QIARWIADRTDVNIRVI-RPPNYAGPLMLGLLLAVIGGLVYLRRSNMEFLFNKTGWAFAALCFVLAMTSG |
| QIA.WIADRTDVNIRVI.RPPNYAGPL.LGLLLAVIGGLVYLRRSNMEF.FNKTGWAF.ALCFVLAMTSG |
Retrocopy | QIAWWIADRTDVNIRVI<RPPNYAGPLLLGLLLAVIGGLVYLRRSNMEFIFNKTGWAFEALCFVLAMTSG |
|
Parental | QMWNHIRGPPYAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNGGVTLGMVLLCEAATSDMDIGKRKIMC |
| QMWNHIRGPPYAHKNPH.GHVNY.HGSSQAQ.VAETHIVLLFN.G.TLGMVLLCEAATSDMDIGK.KIMC |
Retrocopy | QMWNHIRGPPYAHKNPHIGHVNYVHGSSQAQCVAETHIVLLFNDGITLGMVLLCEAATSDMDIGKQKIMC |
|
Parental | VAGIALVVLFFSWMLSIFRSKYHGYPYSFLMS |
| VAGIALVVLFFSWMLSIFRSKYHGYPYSFLMS |
Retrocopy | VAGIALVVLFFSWMLSIFRSKYHGYPYSFLMS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
30 .52 RPM |
SRP017611_kidney |
0 .00 RPM |
111 .09 RPM |
SRP017611_liver |
0 .00 RPM |
71 .37 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1807 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1807 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1807 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.