RetrogeneDB ID: | retro_ggor_550 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:124899973..124900228(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000026027 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C19ORF53 | ||
Ensembl ID: | ENSGGOG00000027024 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.18 % |
Parental protein coverage: | 84.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SKTAAAASEKNRGPRKGGRVIAPKKARVVQQQKLKKNLEVGIRKKIEHDVVMKASSSLPKKLALLKAPAK |
S..AAAASE.NRG.RK.GRV.APKKA.V.QQQKL.KNLEV.I.KKIEH..VMKAS.SLPKKLALLKAP.K | |
Retrocopy | SEEAAAASERNRGRRKDGRVTAPKKACVGQQQKLNKNLEVRIWKKIEHAMVMKASNSLPKKLALLKAPTK |
Parental | KKGAAAATSS-KTPS |
KKGAAAATSS.KTPS | |
Retrocopy | KKGAAAATSSNKTPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 44 .69 RPM |
SRP007412_cerebellum | 0 .08 RPM | 20 .84 RPM |
SRP007412_heart | 0 .00 RPM | 24 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .67 RPM |
SRP007412_liver | 0 .00 RPM | 24 .32 RPM |
SRP007412_testis | 0 .10 RPM | 20 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_628 |
Pan troglodytes | retro_ptro_457 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002525 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004427 | 3 retrocopies | |
Homo sapiens | ENSG00000104979 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027024 | 1 retrocopy |
retro_ggor_550 ,
|
Monodelphis domestica | ENSMODG00000011876 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013141 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007185 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014250 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010565 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006321 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010354 | 1 retrocopy |