RetrogeneDB ID: retro_ggor_682

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:122354348..122355276(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000197849
• Ensembl ID: ENSGGOG00000023114
• Aliases: None
• Description: None

Sequence

>retro_ggor_682
ATGGACCCTGGAAACCATTCCTCAGTGACTGAGTTCATTCTGGCTGGGCTCTCATAACAGCCAGAGCTCCAGCTGCGCCT
CTTCCTCCTGTTCTTAGGAATCTATGTGGTCACAGTGGTGGGCAACCTGGGCATGACCACACTGATTGGGCTCAGTTCTC
ACCTGCACACCCCCATGTACGGTTTCCTCAGCAGTCTGTCCTTCATTGATCTCTGCCATTCCACTGTCATTACCCCTAAG
ATGCTGGTGAACTTTGCGACAGAGAAGAACATCATCTCCTACCCTGAATGCATGGCTCAGCTCTATTTATTCAGTATTTT
TGCTATTGCAGAGTGTCACATGTTGGCTGCAATGGCATATGACCGCTATGTTGCCACCTGCAGCCCCTTGCTGTACAATG
TCATCATGTCCTATCACCACTGCTTCTGGCTCACAGTGGGAGTTTACATTTTAGGCATCCTTGGATCTACAATTCATACC
AGTTTTATGTTGAGACTCTTTTTTGCAAGAATAATGTGATTAACCATTATTTTTGTGATCTTTTCCCTCTCTTGGGGCTC
TCCTGCTCCAGCACCTACATCAATGAATTACTGGTTCTGGTCTTGAGTGCATTTAACATCCTGACGCCTGCCTTAACCAT
CCTTGCTTCTTACATCTTTATCATTGCCAACATCCTCCGCATTAGCTCCACTGAGGGCAGGTCCAAAGCCTTCAGCACTT
GCAGCTCCCACATCTTGGCTGTTGCTGTTTTCTTTGGATCTGCAGCATTCATGTACCTGCAGCCATCATCTGTCAGCTCC
ATGGACCAGGGGAAAGTGTCGTCTGTGTTTTATACTACTATTGTGCCCATGCTGAACCCCTGACCTACAGCCTGAGGAAT
AAAGATGTCAAACTTGCCGTGAAGAAAATTCTGCATCAGACAGCATGT

Alignment

ORF - retro_ggor_682 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.88 %
• Parental protein coverage: 99.68 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFID
          M...N.SSVTEFILAGLS.QPELQL.LFLLFLGIYVVTVVGNLGMTTLI.LSSHLHTPMY.FLSSLSFID
Retrocopy MDPGNHSSVTEFILAGLS*QPELQLRLFLLFLGIYVVTVVGNLGMTTLIGLSSHLHTPMYGFLSSLSFID

Parental  FCHSTVITPKMLVNFVTEKNIIFYPECMTQLYFFLIFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKA
          .CHSTVITPKMLVNF.TEKNII.YPECM.QLY.F.IFAIAECHMLAAMAYDRY.A.CSPLLY.VI.S...
Retrocopy LCHSTVITPKMLVNFATEKNIISYPECMAQLYLFSIFAIAECHMLAAMAYDRYVATCSPLLYNVIMSYHH

Parental  CFSLILGVYIIGLVCASVHTGCMFRV-QFCKFDVINHYFCDLLPLLKLSCSSIYVNKLLILCVGAFNILV
          CF.L..GVYI.G......HT..M.R...FCK..VINHYFCDL.PLL.LSCSS.Y.N.LL.L...AFNIL.
Retrocopy CFWLTVGVYILGILGSTIHTSFMLRL<LFCKNNVINHYFCDLFPLLGLSCSSTYINELLVLVLSAFNILT

Parental  PSLTILCSYIFIIASILHIRSTEGRSKAFSTCSSHMLAVVIFFGSAAFMYLQPSSVSSMDQGKVSSVFYT
          P.LTIL.SYIFIIA.IL.I.STEGRSKAFSTCSSH.LAV..FFGSAAFMYLQPSSVSSMDQGKVSSVFYT
Retrocopy PALTILASYIFIIANILRISSTEGRSKAFSTCSSHILAVAVFFGSAAFMYLQPSSVSSMDQGKVSSVFYT

Parental  IVVPMLN-PLIYSLRNKDVHVALKKMLGKRTC
          ..VPMLN.PL.YSLRNKDV..A.KK.L....C
Retrocopy TIVPMLN<PLTYSLRNKDVKLAVKKILHQTAC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.93 RPM	0.10 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_682 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_682 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023114	6 retrocopies	retro_ggor_682 , retro_ggor_683, retro_ggor_684, retro_ggor_756, retro_ggor_757, retro_ggor_758,
Macropus eugenii	ENSMEUG00000013370	4 retrocopies	retro_meug_2060, retro_meug_2076, retro_meug_35, retro_meug_447,