RetrogeneDB ID: | retro_ggor_98 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:120416207..120416996(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024589 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRRF | ||
Ensembl ID: | ENSGGOG00000023499 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALGLKCFRMVHPTFCNYLAAFIRPVSEVTLKTVHERQHGHRRYMAYSAVPVRHFATKKAKAKGKGQSQT |
MALGLKC.RMVHP.FCNYLAA.IRPVSEVTLKTV.ERQHGHR.Y.A.SAVPV.HFATKKAKAKGKG.SQT | |
Retrocopy | MALGLKCSRMVHPAFCNYLAASIRPVSEVTLKTVYERQHGHRQYVACSAVPVHHFATKKAKAKGKGKSQT |
Parental | RVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQIAMKS |
RVNI.AA.VEDIINLEEVNEEMKSVIEA.KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQI.QI..K. | |
Retrocopy | RVNISAAFVEDIINLEEVNEEMKSVIEARKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIRQISVKL |
Parental | PQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRK |
PQLILVNMASFPECT.AAIKAIRES.MNLNPEVEGTLIRVPIPQV.REHREMLVKLAKQNTNKAK.SL.K | |
Retrocopy | PQLILVNMASFPECTVAAIKAIRESRMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQNTNKAKYSLQK |
Parental | VRTNSMNKLKKSKDTVSEDTIRLIEKQV |
V.TN.MNKLKKSKDTVSEDTIRL.EKQ. | |
Retrocopy | VCTNTMNKLKKSKDTVSEDTIRLTEKQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 1 .82 RPM |
SRP007412_cerebellum | 0 .16 RPM | 3 .15 RPM |
SRP007412_heart | 0 .19 RPM | 1 .13 RPM |
SRP007412_kidney | 0 .53 RPM | 5 .64 RPM |
SRP007412_liver | 0 .29 RPM | 3 .67 RPM |
SRP007412_testis | 1 .14 RPM | 13 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4897 |
Pan troglodytes | retro_ptro_3265 |
Pongo abelii | retro_pabe_80 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000007351 | 1 retrocopy | |
Homo sapiens | ENSG00000148187 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023499 | 1 retrocopy |
retro_ggor_98 ,
|
Mus musculus | ENSMUSG00000026887 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017177 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019570 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021324 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000025997 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000012469 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000016569 | 1 retrocopy |