RetrogeneDB ID: | retro_shar_610 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856751.1:2331202..2331603(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRRF | ||
Ensembl ID: | ENSSHAG00000012469 | ||
Aliases: | None | ||
Description: | mitochondrial ribosome recycling factor [Source:HGNC Symbol;Acc:7234] |
Percent Identity: | 71.85 % |
Parental protein coverage: | 50.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PIVPIRHFATKKAKAKGKGHSQPRVNINASLVEDIIRLEEVDGEMKSVV-EALK-DNFNKNLNIRTSPGS |
P.VPI.HFATK.A.AK.KGH.Q..VNINASLVE.II.LE..D.EMKSVV.EAL..DNF.KNLN.R..PGS | |
Retrocopy | PTVPI*HFATKRANAKDKGHYQS*VNINASLVEHIIHLEQEDMEMKSVVLEALG<DNFYKNLNVRSFPGS |
Parental | LDHITVTTADGKFALNQIGQISLKSPQLILVNMTNFPECTAAAIKAIRESGMNLNPEVDGTVIRV |
LDHI.VT..DGKFALN.I.QISLK.PQL..VN.TNF...TAAAIKAIRE.G.NLNPEVDG....V | |
Retrocopy | LDHIPVTIGDGKFALNEISQISLKFPQLNIVNTTNFLDYTAAAIKAIRENGINLNPEVDGSILEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000007351 | 1 retrocopy | |
Homo sapiens | ENSG00000148187 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023499 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026887 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017177 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019570 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021324 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000025997 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000012469 | 2 retrocopies |
retro_shar_610 , retro_shar_704,
|
Tupaia belangeri | ENSTBEG00000016569 | 1 retrocopy |