RetrogeneDB ID: | retro_hsap_1537 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:22691018..22692943(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259689 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ABCB10 | ||
Ensembl ID: | ENSG00000135776 | ||
Aliases: | ABCB10, EST20237, M-ABC2, MTABC2 | ||
Description: | ATP-binding cassette, sub-family B (MDR/TAP), member 10 [Source:HGNC Symbol;Acc:41] |
Percent Identity: | 88.36 % |
Parental protein coverage: | 87.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 8 |
Parental | GPGSCRCGAFAG-PGAPRLPRARFPGGPAAAAWAGDEAWRRGPAAPPGDKGRLRPAAAGLPEARKLLGLA |
GPGSCRCGA.AG.PGAPRLPRA.FPGGP.A.AWAG.EAWR.G.AAP..D..RLRP.A.GL.EA.KLLGL. | |
Retrocopy | GPGSCRCGALAG<PGAPRLPRAGFPGGPTATAWAGEEAWRSGRAAPSRDDQRLRPMAPGLSEAGKLLGLE |
Parental | YPERRRLAAAVGFLT-MSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRV |
.PER.RLAAAVGFL..MS.VISMSAPFFLGKIID.IYTNPTVDYSDNLTRLCLGLS.VFLCGAAANAIRV | |
Retrocopy | FPERQRLAAAVGFLR<MSGVISMSAPFFLGKIIDAIYTNPTVDYSDNLTRLCLGLSGVFLCGAAANAIRV |
Parental | YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVG |
YLMQTS.QR.V.RLRTSLFSSIL.QEVAF.DK..TGELINRLSSDTALLGRSVTENLSDGLRAGA.ASVG | |
Retrocopy | YLMQTSRQRVVKRLRTSLFSSILGQEVAFSDKAGTGELINRLSSDTALLGRSVTENLSDGLRAGARASVG |
Parental | ISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNV-RTVRAFGKEMT |
I..MF.VSPN.ATFV.SVVP.VSII.VIYGRYLRKLTKVTQDSLAQATQ..EERIGNV.RTVRAFGKEMT | |
Retrocopy | IRTMFCVSPNRATFVVSVVPLVSIIDVIYGRYLRKLTKVTQDSLAQATQ--EERIGNV>RTVRAFGKEMT |
Parental | EIEKYASKVDHVMQLARKEAFARAGFFGATG-LSGNLIVLSVLYKGGLLMGSAHMTVGELSSFL-MYAFW |
EIEK.ASKVDHVM..ARK.AFA.AGFFG..G.LSGNLIVLSVLYKGGLLMGSAHMT.GELSSFL.MYAF. | |
Retrocopy | EIEK*ASKVDHVM*SARKAAFAQAGFFGELG<LSGNLIVLSVLYKGGLLMGSAHMTMGELSSFL<MYAFG |
Parental | VGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EG-VILNEKSFQGALEFKNVHFAYPARPEV |
VGISIGGLS.FYSELMKGLGAGGRLWELLEREP.LPF...EG.VILNEKSFQGALEFKNVHFA.PA.PE. | |
Retrocopy | VGISIGGLSFFYSELMKGLGAGGRLWELLEREPNLPFKEGEG<VILNEKSFQGALEFKNVHFADPACPEA |
Parental | PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE- |
PIFQDFSLSIPSGSVTALVGP.GSGKSTVLSLLLRL.DPASGTISLDGHDIRQLNPVWLRSKIGTV.QE. | |
Retrocopy | PIFQDFSLSIPSGSVTALVGPGGSGKSTVLSLLLRLFDPASGTISLDGHDIRQLNPVWLRSKIGTVRQE> |
Parental | PILFSCSIAENIAYGADD-PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA |
PILFSCSI.ENIAYGAD..PSSVTAE..QRVAEVANAV..IRNFPQGFNTVVGEKGVLLSGGQKQRIAIA | |
Retrocopy | PILFSCSITENIAYGADG<PSSVTAEQVQRVAEVANAVVLIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA |
Parental | RALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKH |
RALLKNPKILLLDEATSALDAENEYLVQEALD.LMDGRT.LVIAH.LSTIKNANMVAVLDQGKITEYGKH | |
Retrocopy | RALLKNPKILLLDEATSALDAENEYLVQEALDPLMDGRTALVIAHHLSTIKNANMVAVLDQGKITEYGKH |
Parental | EELLSKPNGIYRKLMNKQSFISA |
EELLSKPNGIYRKLMNKQSFISA | |
Retrocopy | EELLSKPNGIYRKLMNKQSFISA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 19 .30 RPM |
bodymap2_adrenal | 0 .00 RPM | 19 .83 RPM |
bodymap2_brain | 0 .14 RPM | 11 .23 RPM |
bodymap2_breast | 0 .00 RPM | 21 .65 RPM |
bodymap2_colon | 0 .00 RPM | 14 .70 RPM |
bodymap2_heart | 0 .11 RPM | 16 .91 RPM |
bodymap2_kidney | 0 .00 RPM | 25 .04 RPM |
bodymap2_liver | 0 .00 RPM | 18 .78 RPM |
bodymap2_lung | 0 .00 RPM | 22 .31 RPM |
bodymap2_lymph_node | 0 .22 RPM | 29 .22 RPM |
bodymap2_ovary | 0 .00 RPM | 15 .88 RPM |
bodymap2_prostate | 0 .00 RPM | 31 .21 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 20 .04 RPM |
bodymap2_testis | 0 .23 RPM | 15 .55 RPM |
bodymap2_thyroid | 0 .00 RPM | 20 .30 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 32 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011011 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000023785 | 1 retrocopy | |
Homo sapiens | ENSG00000135776 | 3 retrocopies |
retro_hsap_1470, retro_hsap_1537 , retro_hsap_1542,
|
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |