RetrogeneDB ID: | retro_hsap_2452 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 20:15600126..15600482(-) | ||
Located in intron of: | ENSG00000172264 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224274 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSA | ||
Ensembl ID: | ENSG00000143420 | ||
Aliases: | ENSA, ARPP-19e | ||
Description: | endosulfine alpha [Source:HGNC Symbol;Acc:3360] |
Percent Identity: | 72.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGS-DFLMKRLQKGQKYFDSGD |
MSQK..E.N..EETG..KQ...EKE..LPE..E..KLKAKYPSLGQ.PGG...FLMK.L.KG.KYF.SGD | |
Retrocopy | MSQKLNE-NTVEETGKKKQGMREKECTLPETVEKEKLKAKYPSLGQRPGGP<SFLMKGLRKGKKYFASGD |
Parental | YNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE |
YNMAKAK..NKQLPSA.PDKNL.TGDHIPT.QDLP.RKSSL.TSK.AGGQ.E | |
Retrocopy | YNMAKAK*ENKQLPSAQPDKNLMTGDHIPTTQDLP-RKSSLITSKPAGGQAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 124 .56 RPM |
bodymap2_adrenal | 0 .00 RPM | 163 .53 RPM |
bodymap2_brain | 0 .09 RPM | 190 .22 RPM |
bodymap2_breast | 0 .00 RPM | 144 .46 RPM |
bodymap2_colon | 0 .00 RPM | 142 .49 RPM |
bodymap2_heart | 0 .00 RPM | 105 .62 RPM |
bodymap2_kidney | 0 .00 RPM | 143 .11 RPM |
bodymap2_liver | 0 .00 RPM | 53 .21 RPM |
bodymap2_lung | 0 .07 RPM | 148 .45 RPM |
bodymap2_lymph_node | 0 .00 RPM | 104 .56 RPM |
bodymap2_ovary | 0 .00 RPM | 153 .50 RPM |
bodymap2_prostate | 0 .00 RPM | 132 .15 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 128 .84 RPM |
bodymap2_testis | 0 .00 RPM | 133 .23 RPM |
bodymap2_thyroid | 0 .00 RPM | 218 .24 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 104 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1803 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000128989 | 2 retrocopies | |
Homo sapiens | ENSG00000143420 | 3 retrocopies |
retro_hsap_1449, retro_hsap_2208, retro_hsap_2452 ,
|
Mus musculus | ENSMUSG00000038619 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003267 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000005863 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000000893 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000048617 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |