RetrogeneDB ID: | retro_hsap_2672 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:88997434..88999626(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000242705 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NARG2 | ||
Ensembl ID: | ENSG00000128915 | ||
Aliases: | NARG2, BRCC1 | ||
Description: | NMDA receptor regulated 2 [Source:HGNC Symbol;Acc:29885] |
Percent Identity: | 85.56 % |
Parental protein coverage: | 74.13 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | QREQRSYVDLLVKYAKIPANSKAVGINK-NDYLQYLDMKK-HVNEEVTEFLKFLQNSAKKCAQDYNMLSD |
QREQRSYVDLLVKY.KI.ANSK...I.K.ND.LQYLDMKK.HVNEEVTEFLKFLQNSAKK.AQDYNMLSD | |
Retrocopy | QREQRSYVDLLVKYTKISANSKTIRIKK>NDFLQYLDMKK>HVNEEVTEFLKFLQNSAKKFAQDYNMLSD |
Parental | DARLFTEKILRACIEQVKKYSEFYTLHEVTSLMGFFPFRVEMGLKLEKTLLALGSVKYVKTVFPSMPIKL |
DA.LFT.KILRACIEQVKK..EFYTLHEVTSLM.FFPFRVEM.LKLEK.LLALG.VK.VKTVFPSM.IKL | |
Retrocopy | DACLFTVKILRACIEQVKKFLEFYTLHEVTSLMVFFPFRVEMELKLEKSLLALGRVKCVKTVFPSMLIKL |
Parental | QLSKDDIATIETSEQTAEAMHYDISKDPNAEKLVSRYHPQIALTSQSLFTLLNNHGPTYKEQWEIPVCIQ |
QLSKDDI..IE..E.TAEAMHY.I.KDPNAEKL.SRYHPQ.ALTSQSLFTLLNNHGP.YKE.WE..V.IQ | |
Retrocopy | QLSKDDISAIELPE*TAEAMHYYIRKDPNAEKLISRYHPQLALTSQSLFTLLNNHGPMYKEPWELSVLIQ |
Parental | VIPVAGSKPVKVIYINSPLPQKKMTMRERNQIFHEVPLKFMMSKNTSVPVSAVFMDKPEEFISEMDMSCE |
VIPVAGSKPVKVIYINSPLP..K.TMRER.QIFHEVPLKFMM..NT.VPVSAVFMDKPEEFISEMDMS.E | |
Retrocopy | VIPVAGSKPVKVIYINSPLPRNKITMRERKQIFHEVPLKFMMPQNTFVPVSAVFMDKPEEFISEMDMSHE |
Parental | VNECRKIESLENLYLDFDDDVTELETFGVTTTKVSKSPSPASTSTVPNMTDAPTAPKAGTTTVAPSAPDI |
.NECRKIE.LENLYLDFDD.VTELETFGVTTTK.SKSP.PASTSTVPNMTDAPTAPKA.TT.VAPSAPDI | |
Retrocopy | FNECRKIETLENLYLDFDDEVTELETFGVTTTKASKSPIPASTSTVPNMTDAPTAPKAVTTPVAPSAPDI |
Parental | SANSRSLSQILMEQLQKEKQLVTGMDGGPEECKNKDDQG-FESC-EKVSNSDKPLIQDSDLKTSDALQLE |
SANSRS.SQIL.EQ.QKEKQLVTGMDGGPEECKNKDDQ..FESC..KVSNSDK.L.QDSDLKTSDALQLE | |
Retrocopy | SANSRSSSQILIEQWQKEKQLVTGMDGGPEECKNKDDQS<FESCGDKVSNSDKSLMQDSDLKTSDALQLE |
Parental | NSQEIETSNKNDMTIDILHADGERPNVLENLDNSKEKTVGSEAAKTEDTVLCSSDTDEECLIIDTECKNN |
NS.EIETSNKNDMT.D..HADGERPNVLENLDNSKEKTV.SEAAKTED.VL.SSDTDEECLIID.ECKNN | |
Retrocopy | NS*EIETSNKNDMTMDMEHADGERPNVLENLDNSKEKTVRSEAAKTEDPVLFSSDTDEECLIIDRECKNN |
Parental | SDGKTAVVGSNLSSRPASPNSSSGQASVGNQTNTACSPEESC-VLKKPIKRVYKKFDPVGEILKMQDELL |
S.GKT.VVGSNLS.R.ASPNSSSGQASVG.QT.T.C.P.ESC...KK.IK.VYKK.DPVGEILKMQDELL | |
Retrocopy | SNGKTDVVGSNLSFRSASPNSSSGQASVGKQTTTVCRPAESCXXXKKRIK*VYKKYDPVGEILKMQDELL |
Parental | KPISRKVPELPLMNLENSKQPSVSEQLSGPSDSSSWPKSGWPSAFQKPKGRLPYELQDYVEDTSEYLAPQ |
KPISRKVP.L.LMNL.NSKQ.SVSEQLS.PSD.SS.PKSGWPSAFQKPKG.LPYELQDYVEDTSEYLA.Q | |
Retrocopy | KPISRKVPKLSLMNLGNSKQSSVSEQLSVPSDGSS*PKSGWPSAFQKPKGQLPYELQDYVEDTSEYLASQ |
Parental | EGNFVYKLFSLQDLLLLVRCSVQRIETRPRS-KKRKKIRRQFPVYVLPKVEYQACYGVEALTESELCRLW |
EGNFVY.LF.LQDLL.L..CSVQRIETRP.S.K..KKIRRQFPV.VLPKVEYQACYGVEAL.ESE.C.L. | |
Retrocopy | EGNFVYNLFRLQDLLFLMCCSVQRIETRPHS>KEQKKIRRQFPVDVLPKVEYQACYGVEALIESEFCHLR |
Parental | TESLLHSNSSFYVGHIDAFTSKLFLLEEITSEEL |
TESLLHSNSSFYVGHIDAFTSK.FLLEE.TSEEL | |
Retrocopy | TESLLHSNSSFYVGHIDAFTSKHFLLEETTSEEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 46 .57 RPM |
bodymap2_adrenal | 0 .00 RPM | 48 .25 RPM |
bodymap2_brain | 0 .00 RPM | 25 .06 RPM |
bodymap2_breast | 0 .00 RPM | 54 .88 RPM |
bodymap2_colon | 0 .00 RPM | 50 .43 RPM |
bodymap2_heart | 0 .00 RPM | 30 .18 RPM |
bodymap2_kidney | 0 .00 RPM | 55 .01 RPM |
bodymap2_liver | 0 .00 RPM | 15 .84 RPM |
bodymap2_lung | 0 .00 RPM | 33 .09 RPM |
bodymap2_lymph_node | 0 .00 RPM | 46 .42 RPM |
bodymap2_ovary | 0 .00 RPM | 83 .51 RPM |
bodymap2_prostate | 0 .00 RPM | 64 .08 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 23 .59 RPM |
bodymap2_testis | 0 .17 RPM | 50 .13 RPM |
bodymap2_thyroid | 0 .00 RPM | 63 .84 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 59 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1801 |
Gorilla gorilla | retro_ggor_1865 |
Pongo abelii | retro_pabe_2217 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000128915 | 1 retrocopy |
retro_hsap_2672 ,
|
Gorilla gorilla | ENSGGOG00000022206 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006527 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007133 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |