RetrogeneDB ID: | retro_hsap_2749 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:4023664..4025979(-) | ||
Located in intron of: | ENSG00000144455 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000229241 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PNPT1 | ||
Ensembl ID: | ENSG00000138035 | ||
Aliases: | PNPT1, COXPD13, DFNB70, OLD35, PNPASE, old-35 | ||
Description: | polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:23166] |
Percent Identity: | 87.61 % |
Parental protein coverage: | 98.6 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | LRLRPLSDGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAV |
L.LRPLSDGPF.LP..DRAL.QLQVRAL.SS.GS.AVA.DLGNRKLEISSGKLARFA.GSAV.QSGDTAV | |
Retrocopy | LWLRPLSDGPFCLPGWDRALIQLQVRALLSSTGSQAVAMDLGNRKLEISSGKLARFANGSAVIQSGDTAV |
Parental | MVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDT |
M.TAVSKTKPSPSQFMPLVVDY.QKAAA.GRIPTN.LRREI.TSDKEILT..I.D.S.RP.FPAGYF.D. | |
Retrocopy | MATAVSKTKPSPSQFMPLVVDYGQKAAAVGRIPTNPLRREISTSDKEILTR*IVDCSVRPIFPAGYFCDI |
Parental | QVLCNLLAVDGVNEPDVLAING-ASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVA |
QVLCNLLAVDG.NE.DVLAING..SVALSLSDI.WNGPVG.V.IG..DGE.VVNPTRKEMSSSTLN.VVA | |
Retrocopy | QVLCNLLAVDGINELDVLAING>TSVALSLSDILWNGPVGTV*IGMTDGECVVNPTRKEMSSSTLNVVVA |
Parental | GAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHK |
GAPKSQ.VMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKE.GVTKRTPQKLFTPS.EIVK..HK | |
Retrocopy | GAPKSQTVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSQEIVKHAHK |
Parental | LAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYKRC |
L.MERLYAVFTDYEHDK.SRDEAVNKIRLDTEEQLKE.FPE.D.YEIIESFN.VAK.VFRSI.LNEYKRC | |
Retrocopy | LTMERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEIFPEVDLYEIIESFNTVAKKVFRSIILNEYKRC |
Parental | DGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEF |
DGRDLT.LRN.SCEVDMFKTLHGS.LFQRGQTQ.LC.VTFDSLES.IK.D.VIT.INGIKDKNFMLHYEF | |
Retrocopy | DGRDLTLLRNISCEVDMFKTLHGSELFQRGQTQLLCAVTFDSLESSIKLDRVITTINGIKDKNFMLHYEF |
Parental | PPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESNGSSSMASACGGSLALMDSG |
PPYATNEI.KVTG.NRRELG..ALAEKALYPVIP.DFPF.IRVTSEVLESNGSSSMASACGGSLALMDSG | |
Retrocopy | PPYATNEIVKVTGINRRELGPDALAEKALYPVIPKDFPFAIRVTSEVLESNGSSSMASACGGSLALMDSG |
Parental | VPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIK |
.PI.SAV.GVA.GL.TKTD.EKGEIEDY.LLTDILGIE.YNGDMDFKIAGTNKGITALQADIKLPGI..K | |
Retrocopy | LPI*SAVTGVAMGLATKTDLEKGEIEDYHLLTDILGIEAYNGDMDFKIAGTNKGITALQADIKLPGITMK |
Parental | IVMEAIQQASVA-KKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYN-LKKLQAETGV |
IVMEAIQQASVA.KKEILQIMNK.ISKP.ASRKENGPVVETVQVPLSK..KFVGPGGYN.LKKLQAET.V | |
Retrocopy | IVMEAIQQASVA<KKEILQIMNKAISKPQASRKENGPVVETVQVPLSK*EKFVGPGGYN<LKKLQAETVV |
Parental | TISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLL |
TISQVDEETFS.FAPTP.AMHEARDFI.EI.KDDQEQQLEFGAV.TATITE.RDTGVMVKLYPNM..VLL | |
Retrocopy | TISQVDEETFSIFAPTPGAMHEARDFIAEIRKDDQEQQLEFGAVCTATITESRDTGVMVKLYPNMILVLL |
Parental | HNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSPATTVVRTLNDRSSIVMGEPISQ |
.NTQLDQ..IKHPTALGLEVGQEIQVKYFG.DPADGRMRLS.KVLQS.ATTVVRTLNDRSSIV.GEPISQ | |
Retrocopy | YNTQLDQ*NIKHPTALGLEVGQEIQVKYFGCDPADGRMRLSHKVLQSSATTVVRTLNDRSSIVLGEPISQ |
Parental | SSSNS |
SSSN. | |
Retrocopy | SSSNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 19 .52 RPM |
bodymap2_adrenal | 0 .23 RPM | 45 .89 RPM |
bodymap2_brain | 0 .05 RPM | 30 .12 RPM |
bodymap2_breast | 0 .23 RPM | 25 .51 RPM |
bodymap2_colon | 0 .00 RPM | 14 .31 RPM |
bodymap2_heart | 0 .18 RPM | 24 .79 RPM |
bodymap2_kidney | 0 .33 RPM | 30 .81 RPM |
bodymap2_liver | 0 .00 RPM | 21 .99 RPM |
bodymap2_lung | 0 .00 RPM | 17 .90 RPM |
bodymap2_lymph_node | 0 .00 RPM | 22 .92 RPM |
bodymap2_ovary | 0 .02 RPM | 37 .69 RPM |
bodymap2_prostate | 0 .00 RPM | 20 .94 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 25 .52 RPM |
bodymap2_testis | 0 .00 RPM | 31 .43 RPM |
bodymap2_thyroid | 0 .08 RPM | 48 .28 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 20 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1857 |
Gorilla gorilla | retro_ggor_1912 |
Pongo abelii | retro_pabe_2220 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000138035 | 1 retrocopy |
retro_hsap_2749 ,
|
Gorilla gorilla | ENSGGOG00000006867 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012399 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011934 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |