RetrogeneDB ID: | retro_hsap_2859 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:148703650..148705420(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000241627 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBQLN4 | ||
Ensembl ID: | ENSG00000160803 | ||
Aliases: | UBQLN4, A1U, A1Up, C1orf6, CIP75, UBIN | ||
Description: | ubiquilin 4 [Source:HGNC Symbol;Acc:1237] |
Percent Identity: | 92.88 % |
Parental protein coverage: | 98.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQHGIKDGLTVHLV |
PIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLI..GKILKDGDTLNQHGIKDGLTVHLV | |
Retrocopy | PIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLILSGKILKDGDTLNQHGIKDGLTVHLV |
Parental | IKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGS |
IKTPQKAQDPAAATASSPSTPDPASAPSTTPASP.TP.QPSTS.SASSDAGSGSRRSSGGGPSPG.GEGS | |
Retrocopy | IKTPQKAQDPAAATASSPSTPDPASAPSTTPASPTTPTQPSTSDSASSDAGSGSRRSSGGGPSPGTGEGS |
Parental | PSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMA |
PSATASILSGF............SANFMELQQQMQRQLMSNPEML.QIMENPLVQDMMSNPDLMRHMI.A | |
Retrocopy | PSATASILSGFXXXXXXXXXXXXSANFMELQQQMQRQLMSNPEMLLQIMENPLVQDMMSNPDLMRHMIIA |
Parental | NPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQE |
.PQMQQLMERNPEISHMLNNPELMRQTMELARNPA.MQEMMRNQDRALSNLESIPGGYNALRRMYTDIQE | |
Retrocopy | KPQMQQLMERNPEISHMLNNPELMRQTMELARNPAVMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQE |
Parental | PMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPT |
PMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENRE..............APGSGGEGTGGSGTSQVHPT | |
Retrocopy | PMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREXXXXXXXXXXXXXXAPGSGGEGTGGSGTSQVHPT |
Parental | VSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFA |
V.NPFGINAASL.SGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFA | |
Retrocopy | VLNPFGINAASLRSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFA |
Parental | GNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAP |
GNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSL.SFG.SRTPAP | |
Retrocopy | GNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLVSFGMSRTPAP |
Parental | SAGSNAGSTPEAPTSSPATPATSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQLNSMGF |
SAGSNAGSTPEAPTSSPATPATSSPTGASS.QQQLMQQMIQLLAGSGNSQVQT.EVRFQQQLEQLNSMGF | |
Retrocopy | SAGSNAGSTPEAPTSSPATPATSSPTGASSTQQQLMQQMIQLLAGSGNSQVQTSEVRFQQQLEQLNSMGF |
Parental | INREANLQALIATGGDINAAIERLLGSQLS |
INREANLQALIATGGDINAAIERLLGSQLS | |
Retrocopy | INREANLQALIATGGDINAAIERLLGSQLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .12 RPM | 24 .53 RPM |
bodymap2_adrenal | 0 .00 RPM | 18 .16 RPM |
bodymap2_brain | 0 .02 RPM | 40 .88 RPM |
bodymap2_breast | 0 .00 RPM | 15 .35 RPM |
bodymap2_colon | 0 .04 RPM | 41 .67 RPM |
bodymap2_heart | 0 .00 RPM | 22 .41 RPM |
bodymap2_kidney | 0 .04 RPM | 31 .50 RPM |
bodymap2_liver | 0 .04 RPM | 16 .96 RPM |
bodymap2_lung | 0 .07 RPM | 30 .61 RPM |
bodymap2_lymph_node | 0 .05 RPM | 37 .42 RPM |
bodymap2_ovary | 0 .04 RPM | 37 .88 RPM |
bodymap2_prostate | 0 .02 RPM | 48 .60 RPM |
bodymap2_skeletal_muscle | 0 .44 RPM | 60 .47 RPM |
bodymap2_testis | 0 .17 RPM | 39 .95 RPM |
bodymap2_thyroid | 0 .02 RPM | 25 .97 RPM |
bodymap2_white_blood_cells | 0 .22 RPM | 30 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1934 |
Gorilla gorilla | retro_ggor_26 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000135018 | 1 retrocopy | |
Homo sapiens | ENSG00000160803 | 1 retrocopy |
retro_hsap_2859 ,
|
Gorilla gorilla | ENSGGOG00000008916 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016573 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002222 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009983 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016961 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001444 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .10 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .31 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .15 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .06 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .19 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .11 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .10 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .08 RPM |
YRI_NA19213 | 0 .12 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .06 RPM |